Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13 152 1e-31 seq2 150 3e-31 seq11 145 1e-29 seq6 132 9e-26 >seq13 Length=54295181 Score = 152 bits (168), Expect = 1e-31 Identities = 386/575 (67%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 40048696 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 40048637 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | | | ||| |||| ||| || || |||| Sbjct 40048636 TCCCAAGACACCCGCGACTGGGA-GAACAACCTCAACGACGGAGAGCGCCACTTCATCAA 40048578 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 40048577 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCACCCG 40048518 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| | ||||| |||||||| |||||||| || || Sbjct 40048517 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGAT 40048458 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCT--GATGACGTACATTACAGACGT 25769 ||| ||| | ||||| ||| |||| ||| ||| | ||| |||||||| | ||| Sbjct 40048457 CGAGAATATCCACTCGGAGATGTACAGCCT--CTTGTTAGAT-ACGTACATCAAGGACAA 40048401 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || || ||| || || || || |||||| Sbjct 40048400 CAAGGAGAGGGACCATCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGTGAAGAAGGC 40048341 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||||||||||| || | | || || || | |||| || | || | Sbjct 40048340 CCAATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTGG 40048285 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | || ||| ||||| || ||||| ||| |||| || ||| | |||||||||||| Sbjct 40048284 CGTTCGCTTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTC 40048226 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||||| ||| ||||||||||| ||| | ||||| Sbjct 40048225 AAGAAGCGAGGGCTCATGCCGGGGCTTACCTTCTCCAACGAGCTGATCTCGCGAGACGAA 40048166 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || || ||| | || || || |||||| |||| || Sbjct 40048165 GGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 40048131 >seq2 Length=31488241 Score = 150 bits (166), Expect = 3e-31 Identities = 391/577 (68%), Gaps = 22/577 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 7377528 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 7377469 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | | | ||| |||| ||| || || |||| Sbjct 7377468 TCCCAAGACACCCGCGACTGGGAGAC-CAACCTCAACGACGGCGAGCGCCACTTCATCAA 7377410 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 7377409 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCG 7377350 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| || |||||| | ||||| ||| |||||||| |||||||| || | Sbjct 7377349 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGA 7377291 Query 25712 TCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CT-GATGACGTACATTACAGACG 25768 | || ||| | ||||| ||| |||| ||| ||| || ||| |||||||| | ||| Sbjct 7377290 TTGAGAATATCCACTCGGAGATGTACAGCCT--CTTGCTAGAT-ACGTACATCAAGGACA 7377234 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || | || || | || || ||| ||| || || || || ||||| Sbjct 7377233 ACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGG 7377174 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | | ||||| ||||||||||| | | | || || || | |||| || | || Sbjct 7377173 CCCAATGGGCTTTGAAGTGGATCGATGGATCTCAG----ACTTTCGCCGAGAGGATCGTG 7377118 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| ||||| || ||||| ||| ||| || ||| |||||||||||| Sbjct 7377117 GCCTTCGCGTGC-GTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTGGC 7377060 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||| ||||| ||| ||||||||||| ||| |||||| Sbjct 7377059 TCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACG 7377000 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | || || ||| | || || || |||||| |||| || Sbjct 7376999 AAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 7376963 Score = 150 bits (166), Expect = 3e-31 Identities = 391/577 (68%), Gaps = 22/577 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||||||||| || | || || Sbjct 27065908 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 27065967 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTCTCAA 25592 || | |||| || |||| | | | | | ||| |||| ||| || || |||| Sbjct 27065968 TCCCAAGACACCCGCGACTGGGA-GAACAACCTCAACGACGGCGAGCGCCACTTCATCAA 27066026 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || ||||||||| | | Sbjct 27066027 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCCCG 27066086 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| || |||||| | ||||| ||| |||||||| |||||||| || | Sbjct 27066087 GTTCATGTCCGACGTGCAGGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGA 27066145 Query 25712 TCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CT-GATGACGTACATTACAGACG 25768 | || ||| | ||||| ||| |||| ||| ||| || ||| |||||||| | ||| Sbjct 27066146 TTGAGAATATCCACTCGGAGATGTACAGCCT--CTTGCTAGAT-ACGTACATCAAGGACA 27066202 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || | || || | || || ||| ||| || || || || ||||| Sbjct 27066203 ACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGG 27066262 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | | ||||| ||||||||||| | | | || || || | |||| || | || Sbjct 27066263 CCCAATGGGCTTTGAAGTGGATCGATGGATCTCAG----ACTTTCGCCGAGAGGATCGTG 27066318 Query 25888 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGC 25945 ||||| || ||| ||||| || ||||| ||| ||| || ||| |||||||||||| Sbjct 27066319 GCCTTCGCGTGC-GTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTGGC 27066376 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||| ||||| ||| ||||||||||| ||| |||||| Sbjct 27066377 TCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGGGACG 27066436 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 | || || ||| | || || || |||||| |||| || Sbjct 27066437 AAGGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 27066473 >seq11 Length=45114658 Score = 145 bits (160), Expect = 1e-29 Identities = 383/575 (67%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || ||| ||||||||||||||| | || || Sbjct 34046998 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACCGCCGAAGAAGTCGACCTC 34047057 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || | |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 34047058 TCCCAAGACAATCGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 34047114 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| | | | Sbjct 34047115 CACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTTTGGAGAATCTCGCCTCGCGG 34047174 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| | ||||| ||| |||||||| |||||||| || || Sbjct 34047175 TTCATGTCCGACGTGCAAGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGAT 34047233 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || ||| | ||||| ||| |||| || || ||| | |||||||| | ||| Sbjct 34047234 TGAGAATATCCACTCAGAGATGTA---CAGCCTCCTGCTCGACACGTACATCAAGGACAA 34047290 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || ||| ||| || || || || |||||| Sbjct 34047291 CAAGGAGAGGGACCACCTTTTCCGCGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGGC 34047350 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||| ||||||| || | | || || || | |||| || | || | Sbjct 34047351 CCAATGGGCCATGACGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTCG 34047406 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 |||| ||| || || || ||||| ||| |||| || ||| | ||||||||||| Sbjct 34047407 CCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTT 34047465 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| ||| | ||| ||||||||| | ||| | ||||| Sbjct 34047466 AAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 34047525 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || | ||| | ||||| |||||||| |||| || Sbjct 34047526 GGCTTGCACTGCGATTTCGCCTGCCTAATCTATAC 34047560 >seq6 Length=47127078 Score = 132 bits (146), Expect = 9e-26 Identities = 380/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| ||||||||||||||| | ||||| Sbjct 44871863 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTC 44871922 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 | | |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 44871923 TCGCAAGACACTCGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 44871979 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| | | Sbjct 44871980 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTGGAGAATCTCGCCTCCCGG 44872039 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || ||||| | ||||| ||| |||||||| |||||||| || || Sbjct 44872040 TTCATGTCCGACGTGCAAGTCTCCGAGGCGC-GTGCCTTCTACGGGTTCCAGATCGCGAT 44872098 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || ||| | ||||| ||| |||| || || ||| | |||||||| | || Sbjct 44872099 TGAGAATATCCACTCAGAGATGTA---CAGCCTCCTGCTCGACACGTACATCAAGGATAA 44872155 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||||| || | || || | || || || ||| || || || || |||||| Sbjct 44872156 CAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAGAAGGC 44872215 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | |||||||||||||||||| || | | || || || | |||| || | || | Sbjct 44872216 CCAATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCCGAGAGGATCGTGG 44872271 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | |||||| ||||| || ||||| ||| |||| || ||| | ||||||||||| Sbjct 44872272 CGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTTCTGCT-CGATCTTCTGGCTG 44872330 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| |||||| || | ||| ||||||||| | ||| | ||||| Sbjct 44872331 AAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAA 44872390 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || || ||| | || || || |||||| |||| || Sbjct 44872391 GGCCTTCACTGCGACTTCGCGTGCCTGATCTATAC 44872425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828823869440