Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq82 116 9e-22 >seq82 Length=657493 Score = 116 bits (128), Expect = 9e-22 Identities = 231/342 (68%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 4176 ACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATCCTG 4235 ||| ||||||||||| || || |||| || | | ||| |||||| | | || Sbjct 205862 ACCTAGCATTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAA 205921 Query 4236 TCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCC 4295 || ||||||||||||||||||| || ||||| |||||||| ||| || | ||| || Sbjct 205922 ACCATTTTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACC 205981 Query 4296 TTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCA 4355 |||||| |||||||||| |||||||| || | ||| || | || | | ||||| Sbjct 205982 TTTTCGAAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCA 206041 Query 4356 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 4415 || || | || || | |||||||| | ||||| ||| | |||||| || || | Sbjct 206042 TTCAGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAA 206101 Query 4416 TGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCAAG 4475 ||| | || | | || | || || ||| | | ||| ||||| || || | Sbjct 206102 TGTCATATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCTAA 206161 Query 4476 GCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 | ||||| | || || |||||||| ||||| || ||||| Sbjct 206162 ATGCCCAATCAGAATAACTTTATTTACACCTCTACTAGCCAT 206203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126743528976896