Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq82 208 8e-49 >seq82 Length=657493 Score = 208 bits (230), Expect = 8e-49 Identities = 323/460 (70%), Gaps = 6/460 (1%) Strand=Plus/Plus Query 138494 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 138553 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 460829 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 460888 Query 138554 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138613 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 460889 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 460948 Query 138614 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138673 || || | || ||| || || ||||| ||||| |||||| | ||||||||||| |||| Sbjct 460949 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 461008 Query 138674 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138733 ||||||| |||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 138734 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGA---AGC 138790 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 138791 AGAAGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAACTAAA 138850 || ||| ||| ||||| | || |||| | |||||| | ||| ||||| ||||| Sbjct 461129 AGTAGCGTTA---ATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAA 461185 Query 138851 CTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAATCTGTCGAGT 138910 || ||||| ||||| | |||| |||||| || || || | ||||| | ||| Sbjct 461186 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGT 461245 Query 138911 AGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 138950 || | || | ||||||||| ||||| || | |||| Sbjct 461246 TGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 461285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532659638096640