Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq82 208 8e-49 >seq82 Length=657493 Score = 208 bits (230), Expect = 8e-49 Identities = 332/472 (70%), Gaps = 12/472 (3%) Strand=Plus/Plus Query 138618 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138677 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 138678 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138737 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 138738 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138797 ||| || || || || | || ||| || || || || ||||| |||||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 138798 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138857 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 138858 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138917 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| ||||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 138918 TGA---AGCGGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 138971 || || | ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 461120 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 461173 Query 138972 GCATGAACTAAACTGCCGGGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 139031 ||||| ||||| || || || ||||| | |||| |||||| || || || || || Sbjct 461174 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 461233 Query 139032 AATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 139083 ||| | ||| || | || | ||||||||| ||||| || | |||| Sbjct 461234 AATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 461285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532509240683520