Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq82 127 3e-24 >seq82 Length=657493 Score = 127 bits (140), Expect = 3e-24 Identities = 516/805 (64%), Gaps = 21/805 (3%) Strand=Plus/Plus Query 119923 TTTCATCAGTACCCTTGTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACA 119982 |||| ||| | ||| | ||||| || || || | | | |||| || |||||||| | Sbjct 460867 TTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATA 460926 Query 119983 TAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCG 120042 | || ||| | ||| || | || || | | | ||||| |||||| || || | Sbjct 460927 TTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAG 460986 Query 120043 CAGTATGGAAGTGCTTGTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAA 120102 || | || || || || || || || || || ||||| ||||||||| || | || Sbjct 460987 CACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAA 461046 Query 120103 TTGGTGAACCCTCCGCACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGA 120162 | || ||| | |||||||| ||||||||||||||||| || || |||||| | Sbjct 461047 TAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAA 461106 Query 120163 TATAACTAATAATAGATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAA 120222 ||| | | |||||| || ||| |||||||||| | ||| ||| | |||||| Sbjct 461107 CATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAA 461166 Query 120223 TTTTCACACACGAACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTG 120282 || ||||| || |||||||| || || || || | | ||| || ||| || || | Sbjct 461167 TTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCG 461226 Query 120283 GGATTGAAATCTTAAATAGAGAAGCCGCATTATAATAA--TTGATTACGTGTTGAAGTCG 120340 | | ||||| || || ||| ||||||||| || ||| |||| || || Sbjct 461227 GTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGA--ACGT----AATTCA 461280 Query 120341 GTTTACTTTTTCACTCTGATGTAG------AGC-CATAGCAATT--CCCATATAAAGGAA 120391 | || | ||| || ||| ||| | || ||| |||||||| || Sbjct 461281 TTCTAATATTTTTGGGATATTTAGAAAATAAGCACGCAGATATTAGAACATATAAA--AA 461338 Query 120392 TTGGGGGGTTTCGTACATCTCCTTAGTTACTCTATTTCGTACCAAGTACTTTTCTTTTAA 120451 ||||| | |||| || || | | ||| | ||| ||| ||| || ||| ||| ||| Sbjct 461339 TTGGGCGCTTTCATATATTTTCCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAA 461398 Query 120452 CTGCATTGCACCAGCATATGTAAAATTCATATCTCGGGAATGGTCAATATGAAGATTGAG 120511 || || | | ||||||| ||| |||||||| || |||| | |||| | ||| | Sbjct 461399 TTGTTTTACCGCTGCATATGAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCA- 461457 Query 120512 GTATTCAATA-TCCGCTGGTGAATATTGTTTCAGAAGGTCTTTATCATAAAATCCAAGAC 120570 | | |||| || | || || | ||| | | | ||||||||| || | | Sbjct 461458 TTTCTAAATATTCTTCATAAGAGTAATATTTTAATAAATTTTTATCATATTTACCTAAAA 461517 Query 120571 CAACCAGTTTAGAAATATGGTCATACAATGAAATTGGATCGAATTGTCCATATACATCCT 120630 ||||| ||| | ||| |||||||| || || || ||||| ||||| | | | Sbjct 461518 GAACCATTTTTTTTACATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTT 461577 Query 120631 TACGAAGGGTGTACATAGTTAAACGACCCGCTACATATTGATAATCCGGTTCTTCAACGG 120690 | | ||| | | |||| ||| | | || | |||||||||||| ||| || | Sbjct 461578 TTCTAAGATGGAATATAGCTAATCTTGCTGCCATATATTGATAATCTGGTGTATCTGGTG 461637 Query 120691 AAATCATATTGGTTGCGGCTTTAAT 120715 |||| | || || ||| |||||||| Sbjct 461638 AAATTAGATCGGCTGCAGCTTTAAT 461662 Score = 89.7 bits (98), Expect = 8e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 ||||| |||||||||| ||| ||||||| ||||||||||||| |||||| ||||||| | Sbjct 216772 GGCCCTTTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 216830 Query 198995 TCCAGTAGGGGCCA 199008 ||||| |||||||| Sbjct 216831 TCCAGCAGGGGCCA 216844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741436847066880