Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq477 109 2e-19 >seq477 Length=38297 Score = 109 bits (120), Expect = 2e-19 Identities = 225/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 32129 GGAAGAGTGATTGGGCGGTGATCACTGTTTATGCTACTAAACTGATAATCACCGTCTCTT 32188 || || |||||||| | || || || ||||| ||||||| || | || || | Sbjct 31716 GGCAGTGTGATTGGTCTATGGTCTTGATTGATGCTGGTAAACTGGTAGCCGCCTTCGCGA 31657 Query 32189 GTTTTGTTCATGATCTTTATCATGTTGTGACCGTCTTTGGTCCTTACAAAGACTTCATCA 32248 || | ||| | | ||| ||||||||||||||||| || | || || ||||||||| Sbjct 31656 GTGTAGTTGAGCACCTTAATCATGTTGTGACCGTCAGCTGTGCGAACGAAAACTTCATCA 31597 Query 32249 CCTGGATGTACTGGCGTATTTGGTTCAATAACAACATATTCTCCTGATTGAATCCTTGGC 32308 || | ||| |||| || |||||| || | || | || || || ||||| | |||| Sbjct 31596 CCAGAATGCACTGAGGTGCCTGGTTCGATGAGGACGAACTCACCAGACTGAATGCGTGGC 31537 Query 32309 CACATGCTGTCACCCTTAACCTTCAGACCGTAAGCATCTTTATCGCCGCTGTAGATGCTT 32368 |||||||| || || ||| || ||||| |||| || |||| || || | Sbjct 31536 CACATGCTATCGCCGCGAACACGAAGCCCGTATGCATTCGGGTCATCGCTATAAATCTTC 31477 Query 32369 AACCAACCGGATCTGAATTCAATCATATCCACTGAGCCATCAACTCCCAAAACGGCTTCA 32428 | ||| || | | | || | ||| || | |||||||||||| |||||||| ||| Sbjct 31476 AGCCATCCACCACGGTACTCGACCATGTCGATCATGCCATCAACTCCTAAAACGGCATCA 31417 Query 32429 CCAATTACCGGAACAAAACCCGCACGAACGTTACC 32463 |||| || || |||| || | ||||| || || Sbjct 31416 CCAACAACAGGGACAAGCCCTGGTCGAACCTTGCC 31382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136772165106304