Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq477 681 0.0 >seq477 Length=38297 Score = 681 bits (754), Expect = 0.0 Identities = 1034/1453 (71%), Gaps = 49/1453 (3%) Strand=Plus/Minus Query 7412 CAGGACGACAACGTGGTCTATCCCTATGTGGTCTGGCAGAACATCACCGGTTCTCCAGAG 7471 ||||| ||||| |||||||||||||||| || ||||||||||||| |||||| || ||| Sbjct 14646 CAGGATGACAATGTGGTCTATCCCTATGCCGTTTGGCAGAACATCAGCGGTTCACCTGAG 14587 Query 7472 AACTACATTGCCCAGCGCCCTGACGCAGACTTTTTCACGCTGCAGGTGGATGCATATGCC 7531 |||||| | | | | ||||| ||| | ||| | |||||||||||| |||| |||||| Sbjct 14586 AACTACCTGGACAAACGCCCGGACACTGACAGCTACACGCTGCAGGTAGATGTGTATGCC 14527 Query 7532 GACACCGTGGATGAAGTGATTGCCGTGGCTACTGCGCTGCGGGATGCCATTGAGCCGCAC 7591 || || || | | | ||||||| || |||||||| |||||||||||||| ||| Sbjct 14526 GATACGGTCGCGTCTGCTACATCCGTGGCAACAGCGCTGCGTGATGCCATTGAGCCACAC 14467 Query 7592 GCGCATATCACGCGCTGGGGCGGACAGGAAAGAGACCCCGAAACAAAACGCTATCGCTAC 7651 || | || || | |||||||| ||| | ||||| |||||||| ||||||||||| Sbjct 14466 GCCTACATTACCAGATGGGGCGGGCAGAGCCGCGACCCAGAAACAAAGCGCTATCGCTAT 14407 Query 7652 TCATTCGATGTTGACTGGATAGTCACTCGATAAACGT----ATTATTCAACC-ACCGGCC 7706 |||||||| ||||| |||||||| ||| ||| | | | |||||| ||||||| Sbjct 14406 TCATTCGACGTTGATTGGATAGTGCTTCGTTAACATTCCCAACTTTTCAACATACCGGCC 14347 Query 7707 TTGAGCCGGtttttttATGACCGGAGATAACAATGTCTGTATTGACGCAAGGTACGCAGC 7766 ||| |||||||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct 14346 TTGCGCCGGTTTTTTTATGACCGGAGATCACCATGTCTGTATTGACACAAGGCACCCAGT 14287 Query 7767 TCTTTGTGCTCGTAAAAGGCAAGGTGAGCGAAGTTGAATGTATCACTGCATTTTCACCCG 7826 | | ||| |||| || ||| || |||||||||||||| ||||| |||| | |||| Sbjct 14286 TTTATGTCCTCGCCAACGGCGTTGTAAGCGAAGTTGAATGCATCACATCATTCACCCCCG 14227 Query 7827 GCAGCAATCCGGCTGACCAGATTGAAGACACCTGTCTTTCTGAGCGCTTTGATCGCAGCT 7886 || | || || ||||||||||| ||||| |||||| | |||||| |||| || Sbjct 14226 GCGGTAACCCTGCTGACCAGATCGAAGATACCTGTTTAAGCGAGCGCAACAGCCGCACCT 14167 Query 7887 ATAAGCGTGGTCTTCGAACGCCTGGCA-CAGCATCACTGACGCTTAACGCTGATCCTAAA 7945 |||| ||||| || || || |||| |||| | | ||||| || |||||||| ||| Sbjct 14166 ATAAAAAAGGTCTGCGCACACC-GGCATCAGCTACCGTCACGCTGAATGCTGATCCAAAA 14108 Query 7946 AATACCAGCCACATCATGCTCTACAACCTGTCCATTTCGGACGACGAAAAGGATCAGGAC 8005 || |||||||| | ||||| | |||||| | || |||||||| |||| Sbjct 14107 AACGCCAGCCACCTGATGCTGCATAACCTGGCAGAATCTGACGACGA-----ATCA-CTG 14054 Query 8006 CTGACCTTCGCGATTGGATGGTCAGACGGAACCGCATCGCCAACTGCGGCTGAAAATGGT 8065 |||||||| || |||| ||| |||| || || |||||||| || | |||| Sbjct 14053 CTGACCTTTGCCGTTGGCTGGGCAGATGGTGAATCAGAACCAACTGCAGCAGCGCCTGGT 13994 Query 8066 ACACCAGGTGCAGTCGATGGCCTGGTGCTACCTGATAGCCGCACATGGTTCGTATTCAAA 8125 | ||| || || |||||| || || | ||||| || || ||||| || ||| || Sbjct 13993 GCTCCAAACGCTGTAGATGGCTTGCTGTTGCCTGACGATCGTACCTGGTTTGTTTTCCAA 13934 Query 8126 GGCTATGTGTCCGACTTCCCGTTTGATTTTGCAGCAAACACGGTTGTTTCTACTTCTGCA 8185 ||||| || |||| ||||| || ||||| |||||||| || || || | || Sbjct 13933 GGCTACGTTACCGATTTCCCATTCGATTTCCAGGCAAACACAGTGGTGAGCACGACCGCG 13874 Query 8186 TCTATCCAGCGCTCCGGCTCTGCTGTATGGGTGCCAAAAG-TCGTGACCCCA--TAA--A 8240 |||| ||||| || || || | || ||||| ||||| | || | | || ||| | Sbjct 13873 ACTATTCAGCGTTCTGGTCCTTCCGTTTGGGTTCCAAAGGCTCAAGCCGGCAGCTAATCA 13814 Query 8241 AT--------CAGGGC----GGCAACGCCCTTATTAATCA-GGAT--TAA--TAATGAAA 8283 || | |||| || ||| | | | ||| ||| ||| |||||| Sbjct 13813 ATCTATCCGCCGGGGCCGAGTGCCCCGCGTTAACTTCTCATTGATGGTAACGACATGAAA 13754 Query 8284 TTAACACTTGATGCACTCAAGGAGTCCGGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAA 8343 ||||| || || | | || || ||||| ||||||||||||||||| ||||||||| Sbjct 13753 TTAACTCTGGAATCGTTGAAAGAACATGGCGCCTTTACCGGTCGCCCGGTAGAGAAAGAA 13694 Query 8344 ATCACCTGGACGCAAGGCGATaaaaaaaTCACCGCGACCGTGTATGTTCGCCCGATGGGT 8403 |||||||||| ||| ||||| ||| || | || || || |||| ||| || || ||||| Sbjct 13693 ATCACCTGGAAGCAGGGCGAGAAAGAACTGACGGCAACGGTGTTTGTACGGCCTTTGGGT 13634 Query 8404 TATCACACAGCAACGTCCGATGTGCTGGCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGG 8463 || |||| || || ||| | || || | ||||| || || ||||| || || || Sbjct 13633 TACTACACTGCGCGATCAGATATTCTCGCGGTAGGTGGAAAAGTTGATGGCGTTGCTGGT 13574 Query 8464 CGTATCGCCGCATCCATCTGCGATGAACATGGTAAACCCATCTTCACCCCGGCTGACATT 8523 || ||||| || || || || ||||| |||| | || | || ||||| || || || Sbjct 13573 CGCATCGCAGCTTCTATTTGTGATGAGAATGGCCAGCCAGTATTTACCCCTGCAGATATC 13514 Query 8524 ACTGGTGAGGCAGATCCTGAACGTGGTGCACTGGATGGCGGCCTGACGGTAGCACTGCTT 8583 ||||||||||| ||||| || |||||||| || ||||| | | || || || |||| Sbjct 13513 ACTGGTGAGGCGGATCCGGATCGTGGTGCGCTTGATGGTGCTTTAACAGTGGCTTTGCTG 13454 Query 8584 CTGGCCATTCAGGAAGTTAACGATCTGGGAAAGACTTCGAGC--TCAGCGCCGAAGACGA 8641 |||||||||| || || || | ||||||||||| |||| ||||||| || ||||| Sbjct 13453 GTGGCCATTCAAGAGGTCAATAACCTGGGAAAGAC--GGAGCCATCAGCGCAGACGACGA 13396 Query 8642 ATTCTGGTGCGAGCTCGTCCTCAACGGAATCGGAGGCAGAACAATCGCCGAAGCGCGGGA 8701 | ||||||||| | ||||| || || || || ||||| ||| | || || || | ||| Sbjct 13395 AGCCTGGTGCGAATTAGTCCTGAATGGTATTGGCGGCAGGACAGTGGCAGAGGCTCAGGA 13336 Query 8702 AGTCCTCTCA----TTCAAAGAGTCCCAACTCTGGGCAAAGTACCGGGAACGA-TACGGG 8756 | ||||| ||| |||| | || ||| ||||| | | ||| | | || Sbjct 13335 --GCGTCTCAGCCTTTC--TGAGTTTCGCCTGTGGATGAAGTATC-GTAACAAGTTTGGC 13281 Query 8757 AGTCTGAACCCTATGTTGCGGGTTGAGTGGGGTGCCGGGCTGGTGAGCAGCATGATAGCC 8816 ||||| ||||||||| ||||| |||||||||||||| ||||||| || | ||| || Sbjct 13280 AGTCTAAACCCTATGATGCGGACTGAGTGGGGTGCCGCGCTGGTGGCAAGTACGATCGCA 13221 Query 8817 AACGTTAACAGAG 8829 ||||| || |||| Sbjct 13220 AACGTCAATAGAG 13208 Score = 136 bits (150), Expect = 9e-28 Identities = 398/599 (66%), Gaps = 32/599 (5%) Strand=Plus/Minus Query 6222 CGGCGCGAGTGGATAAAAAAGTGGGCAAAAATAGCTTATGAACGAGCAACTGGTAAACGA 6281 || || || ||| |||| || ||| | || || ||||| ||||||| |||||||| Sbjct 15792 CGCCGGGAATGGTTAAAGAACTGGTTGAGGATTGCCCATGAAAGAGCAACAGGTAAACGC 15733 Query 6282 ACTGATAGCAGTGATACGGGAACAAATCACAGCGCAGAGGGAGCAGACGGAAGCGATAAG 6341 ||||||||||| | | |||| | | | || || ||| ||||| | ||| ||| Sbjct 15732 ACTGATAGCAGCACTGCAGGAAGAGACGAAGGCAAAGCAGGAACAGACAGCAGCACTAAC 15673 Query 6342 CCGTCTGGCTGAATCAAATATGGCGCTTTGCGATATCATT----ATCCAGTC-GC--TGG 6394 ||| |||||||| || ||| || | || | | || || || || || || Sbjct 15672 CCGCCTGGCTGAGTCCAATGAATCGTTGGTCGCTGTTCTTGTTGATGCATTCAGCAATGA 15613 Query 6395 CTGGTGA-AC-TAGATG-------AAAC--TGCAGAGCAACAAACCTATCTGAGCGGTAA 6443 | | || || | ||| |||| || ||||| |||| |||||| ||| | Sbjct 15612 CATGGGAGACGTTGATATCATTAAAAACGATG-AGAGC--CAAAACTATCTCAGC----A 15560 Query 6444 ACCCAGGGGGTAAC-ATGCAGGCCGGGAAATTGCGCCACAGGATTACTCTGCAGGAGCCA 6502 | | |||||||| ||||||||||| || ||||||| | || || ||||| |||| Sbjct 15559 ATC--GGGGGTAATTATGCAGGCCGGTAAGCTGCGCCATCGCATCACCTTGCAGAAGCCC 15502 Query 6503 GTAAAAGTGCAGAACCCGACAACGGGAGCCGTAATTAATACCTGGCGAGATGTTGCGACT 6562 || || |||||| | || ||| || | ||| |||| |||| ||| |||| Sbjct 15501 GTTAAGGTGCAGGATCCTGAAACTGGTTCAGTAGAAAATATATGGCAGGATCTTGCTCAA 15442 Query 6563 GTCTGGGCCGAAGTTTCACCATTGTCAGCACGTGAATTTATTGCTGCGCAGGCTTCTCAG 6622 | |||||||| ||||| || | || || || || ||| | || || ||||| || Sbjct 15441 CTTTGGGCCGAGGTTTCTCCGCTTTCTGCCCGAGAGTTTGTGGCCGCTCAGGCAATGCAA 15382 Query 6623 GGTGAAATAACCACCCGTATTGTTATTCGCTACCGTGCCGGAGTTACCAG--AAAACATC 6680 || | || || | ||| | | ||||||||| | || | | || |||| ||| Sbjct 15381 AATGCCGTCACTACAAGGATTACTGTCCGCTACCGT-CAAGACAT-CGAGCCAAAATATC 15324 Query 6681 GCATCTTGTTTCGTGGTGCTGTGTATAACATCCATGGTGTTCTGCCCGATCCAAAAAGCG 6740 | || |||||||| ||| | | ||||| | ||| || || ||||||| ||||| | Sbjct 15323 GGATATTGTTTCGCGGTAAAATATTCAACATTGAAGGTATTTTGTCCGATCCGAAAAGTG 15264 Query 6741 GACGTGAATACCTGACGCTTCCCTGTTCTGAGGGTGTTAATGATGGCTGATAGTGTTGA 6799 | | |||||| |||||| | || ||||| || || ||| |||||||||||| | ||||| Sbjct 15263 GTCTTGAATATCTGACGTTGCCATGTTCGGAAGGGGTTGATGATGGCTGATGGCGTTGA 15205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120180436219584