Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq477 1182 0.0 >seq477 Length=38297 Score = 1182 bits (1310), Expect = 0.0 Identities = 2062/2984 (69%), Gaps = 93/2984 (3%) Strand=Plus/Minus Query 2161 TTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTTCAA 2220 ||| ||||||||| | |||| || || || ||| ||| | || ||||| |||| Sbjct 19374 TTACCGATGAACGTAATATGCAGATCAGCACCGTTTGGTCTTGCATAAGACTGATATCAA 19315 Query 2221 CGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTAAAA 2280 | | || |||| | ||||| ||||| || ||||| | |||||| | ||| | | Sbjct 19314 CCGTGACAGCATCTCTCCCGCTAGATGTGTTTGAAACTGTT---AATGACCAACGTCAGA 19258 Query 2281 AAGT-GGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACATG 2339 |||| ||| || ||||| |||||||| || ||||| | | || ||| | | ||| Sbjct 19257 AAGTCGGAAACGAA-AATCCCCTGGCGCGCCTCCTGCGATTCCGTCCAAATAATTTTATG 19199 Query 2340 ACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCATAT 2399 ||||| | ||||| | || || ||||| ||||| |||||| || || || || || Sbjct 19198 ACCGCGCTTGAATTTCGCGAAGCGATGACAATGCAACTCTGTGCATATGGGAATGCGTAC 19139 Query 2400 GCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTGCC 2459 || | || || || || |||| ||||| ||||||||| | | ||| | | ||| Sbjct 19138 GCCCACGTTGAGCGAAATAGCGTTGGTGATGTGATCAGCATGGTTCCGTTAATGAGCGCC 19079 Query 2460 AATATGGATGTGAAGCTC-GT-----CGGaaaaaaaGTGGTTTATCGCTATCAACGCGAC 2513 |||||||||||| ||| || ||| ||||| || |||| |||||| |||| || Sbjct 19078 AATATGGATGTGCGACTCAGTGATAACGGCAAAAACGTTATTTACCGCTATAAACGAGAT 19019 Query 2514 AGCGAATACGCCGACTTTTCGCAGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACC 2573 | |||||||| ||||| || ||||| ||||| || || ||||| || || || | | Sbjct 19018 ACGGAATACGCAGACTTCAAGCCTAAAGAAATTTTCCATCTGAAAGGTTTTGGTTTTAAC 18959 Query 2574 GGGCTTGTAGGCCTGTCACCCATTGCTTTTGCCTGT---AAATCGGCAGGTGTGGCAGTT 2630 || || || || ||||| || | || || | || |||||||| |||||||| | Sbjct 18958 GGTCTAGTGGGGCTGTCTCCGTTGGCCTT---CAGTGCGAAATCGGCCGGTGTGGCGATC 18902 Query 2631 GCGATGGAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTC 2690 || ||||| ||| | ||||| || || ||||| || ||||||||||| |||||||| || Sbjct 18901 GCTATGGAAGACAATCAGCGCGAGTTTTTTGCTAATGGCGCCAAGTCACCGCAAATTCTG 18842 Query 2691 TCAACTGGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAA 2750 || | | || ||||| ||| || | ||||| || | ||||| |||||||| Sbjct 18841 ATGACAGATGGCAAGGTGCTTACTAAAGATCAGCGTGGACAACTGGAAGAAAACTTCAAG 18782 Query 2751 GAGATCGCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACA 2810 ||||||||||||||||| || ||||| ||||| |||||||||||| || ||| | || Sbjct 18781 GAGATCGCCGGCGGCCCAGTTAAAAAGCGCCTTTGGATTCTGGAAAGTGGATTTACCACT 18722 Query 2811 TCGGCAATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTA 2870 ||| || || || |||| |||| | ||||| | | | || || ||||||||| Sbjct 18721 CAGGCTATAGGGATATCTCCAGCGGATTCTCAAATGCTTGAAGCGCGTAAGTTTCAGGTA 18662 Query 2871 AGTGAACTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCA 2930 ||||||||||| || | ||| || ||||||||||| || || || ||||||||| || Sbjct 18661 GCCGAACTGGCGCGCTTTTATGGTGTCCCGCCTCACCTGGTAGGGGATGTCGAGAAAACA 18602 Query 2931 ACGAGCTGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAG 2990 || ||||| || || || || || || ||||| ||||||||||||||| | | Sbjct 18601 ACTTCATGGGGTAGCGGTATTGAACAACAAAACCTCGGATTCCTGCAGTACACCTTAAAA 18542 Query 2991 CCCTATATCTCCAGGTGGGAAAACAGCATTCAGCGGTGGCTTATTCCTGCTAAGGATGTT 3050 || ||| | | |||||| |||| ||| |||| ||| | | | | ||| Sbjct 18541 CCTTATCTTGATCGCTGGGAATACAGTATTGAGCGCTGGTTGGTAAAAGATGCCGATCAG 18482 Query 3051 GGCCGCATTCATGCTGAGCACAACCTCGACGGCCTGCTGAGGGGCGATTCGGCATCCCGC 3110 ||| | |||||||||||||| || | ||||| || ||| | || |||||| || |||| Sbjct 18481 GGCAGGATTCATGCTGAGCATAATTTAGACGGTCTACTGCGCGGTGATTCGACAAGCCGC 18422 Query 3111 GCTGCCTTTATGAAGGCAATGGGAGAGGCAGGGCTACGCACCATCAACGAGATGCGACGA 3170 || | || ||| | |||||| | | || | |||||| ||||||| | | ||| Sbjct 18421 GCCTCTTTCATGCAAACAATGGTGAATACTGGTATTCGCACCGTCAACGAAGTCAGGCGA 18362 Query 3171 ACGGACAACCTCCCGCCATTGCCGGGTGGCGATGTGGCAATGCGCCAGTCGCAATACGTG 3230 ||| ||| | || || | || || || ||||| || | ||||||||||| |||| Sbjct 18361 CTGGATAACTTGCCACCGCTTCCCGGCGGAGATGTAGCGACACGCCAGTCGCAGAACGTA 18302 Query 3231 CCGATCACCGATTTAGGAACCAACAAAGAGCCCCGTAATAACGGGGCTTAATTTTTATGG 3290 || || |||||| | |||| | |||||||||||| | | |||||||||||||||||||| Sbjct 18301 CCCATTACCGATCTCGGAAGAACCAAAGAGCCCCGCACTGACGGGGCTTAATTTTTATGG 18242 Query 3291 GGGCCGTAATGCCTGAAATCGTAAAAACGCTGTCCTTCGACGAGACAGAAATCAAATTCA 3350 ||||| | |||||||| || ||||| ||| | |||||| |||||||||| || || | Sbjct 18241 GGGCCATGATGCCTGATATTCAGAAAACCCTGGCGTTCGACCAGACAGAAATAAAGTTTA 18182 Query 3351 CCGGTGACGGTAAACAGGGGATTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATT 3410 |||| |||||| | | || | |||||| ||||||||||| ||||| || || || || | Sbjct 18181 CCGGCGACGGTGATAAAGGCACTTTTGAGGGCTACGCCTCAGTTTTCAACAATACGGACT 18122 Query 3411 CCGATGGCGACATCATTCTGCCCGGGGCGTTTAAAAACGCGCTGGCGAACCAGACCCGAA 3470 |||| || ||||| || ||||| || || || | | | || || | ||||| Sbjct 18121 CCGACGGAGACATTATCCTGCCAGGTGCATTCAGCGGTGTTATTGCTGGTCAAAGCCGAA 18062 Query 3471 AAGTGGCGATGTTTTTTAACCACAGGACGTGGGAACTGCCGGTTGGCAAATGGGACAGCC 3530 | || || ||||| |||||||| |||| | | | || ||||| |||||||| | Sbjct 18061 AGGTCGCCATGTTCTTTAACCATCAGACGCGCGCGATCCCTGTTGGTAAATGGGATTCCA 18002 Query 3531 TGGCTGAGGACGAAAAAGGCCTGTATGTGCGCGGTCAACTTACCCCAGGACACAGCGGCG 3590 || ||||||||| ||||| |||| ||| ||||||||||| || ||||||| || Sbjct 18001 TGCATGAGGACGATAAAGGGCTGTTTGTTCGCGGTCAACTCACGCCAGGACTTAGTCTGT 17942 Query 3591 CCGCTGACCTAAAAGCGGCAATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTT 3650 | | ||||| |||||||||||| | ||||| || |||||||||||||| || || || | Sbjct 17941 CTGAGGACCTGAAAGCGGCAATGAAACACGGCACCGTTGAAGGTATGTCAGTCGGTTTCT 17882 Query 3651 CCGTTGCGAAAGACGATTACACCATCATTCCAACAGGCCGCATTTTTAAGAATATCCAGG 3710 |||| | || ||||| || || | | |||| |||||| || || || Sbjct 17881 CCGTCGGCCCCGATGATTATACAGTCGGCACTTCCGGCCTCATTTTCAAAAACATTTCTT 17822 Query 3711 CTCTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCA 3770 |||||| |||||||| |||||||||||||| |||||||| | ||||||| | | |||| Sbjct 17821 ATCTGCGGGAAATCAGTGTCTGCACTTTCCCGGCCAACGAGCTGGCTGGCGTGACCGCCA 17762 Query 3771 TGAAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAG 3830 |||||||| |||| ||||| |||| |||||||| | ||| ||||||||||||||||| Sbjct 17761 TGAAAAGTATCGACGGCATCAAAACCATTCGTGACGCGGAAGCCTGGCTGAGGGATTCAG 17702 Query 3831 TCGG------CCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGA 3884 |||| || | | || | |||||| || |||||||| ||||||| || Sbjct 17701 TCGGTTTGACCCGCTCTGAAGCGCAGGCATTT------ATTGCCCGCGTTAAGTCCGCAG 17648 Query 3885 TTCGGAGCGAGTCCGAGGGCGACGGAAACGAAGCACAAATAAACGCTCTGCTTCAGAGCA 3944 ||||||||||||| ||| || | || |||| ||| ||| ||| Sbjct 17647 GCCGGAGCGAGTCCGGTAGCGGCG------------ACATTGACGCGCTGGCACAGCGCA 17600 Query 3945 TCAAATCTTTCCCTTCTAA-CTTAGG--TAAATAA---------TTATGTCTGAACTCG- 3991 | || || || | |||| || || | |||| |||||||||| | | Sbjct 17599 TAAACTCATTTGCCGCTAATCTGCGGAATGCATAACGGAGCACCATATGTCTGAATTAGC 17540 Query 3992 CTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAGAAAATGACCCAGCTTTTCGATGCGC 4051 | ||| | ||||||| || || | ||||| | || | | | || |||| Sbjct 17539 CACTC-TCGAAAAAGCGATTGAGAATTCCCAAAAAGAAGTTAAGGAACTCATCGA----- 17486 Query 4052 AGAA-AGCAGAAATCGA--AAGCACA--GGCCAGGTTTCCAAACAGTTGCAGTCCGACCT 4106 |||| ||| ||||| | || || | ||| | || || | ||||| |||| || Sbjct 17485 AGAACAGCGTAAATCCATCAATCAGAACGGCGAAATTAACACGAAACTGCAGGCCGATCT 17426 Query 4107 GATGAAAGTACAGGAAGAGCTGACCAAATCCGGCGCTCGCCTCTTCGATCTGGAACAGAA 4166 || |||| ||||||||||||| | ||||| ||||||| |||||||| || || || Sbjct 17425 GACCAAAGCTCAGGAAGAGCTGAAGACCACCGGCACTCGCCTGTTCGATCTTGAGCAAAA 17366 Query 4167 ACTGGCATCCGGCGCTGAGAATCCTGGTGAGAAGAAATCCTTCTCTGAACGGGCTGCTGA 4226 ||| || | | | ||| || | | || || || | || || | | || Sbjct 17365 ACTTGCTGGTAACTCACCGGATCAGACTGCGCAAAAGTCATTTGCCGAGCGCGTGTCCGA 17306 Query 4227 AGAGCTTATTAAGTCATGGGACGGTAAACAGGGCACCTTTG---GCGCTAAAACGTTTAA 4283 ||| || || || ||||| || | ||||| | | || | ||| | Sbjct 17305 AGACCTGATGAAAGGCTGGGATGGCTCCC---GCACCAAAGCGAAAGTTACCAGCTTTGA 17249 Query 4284 CAAGTCACTAGGCAGTGACGCTGATTCGGCTGGCTCACTGATCCAGCCTATGCAGATCCC 4343 || | | || | ||| | || || || | ||| ||||||| ||| || || Sbjct 17248 TAAAGCGATCGGTTCCGGCGCAGCGTCAGCGGGTGCCCTGGTCCAGCCGCAGCAAATGCC 17189 Query 4344 AGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATTCGTGATCTGCTGGCTCAGGGCCG 4403 ||| || | |||||||| ||||| ||||| ||| ||||||| || ||||| || ||||| Sbjct 17188 AGGTATTCTGATGCCAGGGCTGCGTCGTCTGACCGTTCGTGACCTTCTGGCACAAGGCCG 17129 Query 4404 CACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAGGTGTTTACCAATAACGCCGACGT 4463 | | |||||||||| |||||||| |||||||| | ||||| ||| ||||| | | Sbjct 17128 TATTACCAGTAACGCGCTGGAATACGTGCGTGAGAATGTGTTCACC---AACGCTGCTGC 17072 Query 4464 G---GTGGCAGAGAAAGCA--CTGAAGCCAGAATCGGATATCACCTTCAGCAAACAAACC 4518 | ||||| ||| ||| || ||||| ||| | |||||||||| |||| |||| Sbjct 17071 GCCAGTGGC--GGAAGGCACCCTCAAGCCTGAAAGTAACATCACCTTCACCAAAGAAACG 17014 Query 4519 GCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGTCAGGTGATGGATGATGCG 4578 ||||||||||| |||||||| |||||| | ||||| || || ||| | ||||| ||||| Sbjct 17013 GCGAACGTGAAAACCATCGCCCACTGGATCCAGGCGTCGCGACAGATCATGGACGATGCT 16954 Query 4579 CCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGCCTGGCACTGAAGGAAGAG 4638 || ||| ||||||||||| ||| |||| | ||||| || ||||| ||| |||||| Sbjct 16953 CCGGCGCTGCAGTCCTACATCAACTCCCGCATGATGTATGGGCTGGCGCTGGTGGAAGAA 16894 Query 4639 GGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAAGGGCTGAACAAAGTGGCA 4698 ||| |||| ||||| || || || || ||||| ||| | || | ||| ||| || Sbjct 16893 AATCAGATGCTAAACGGTGATGGGACTGGCGATAATCTGCAGGGCATTAACGTAGTCGCG 16834 Query 4699 ACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCAC 4758 | || |||||| ||| |||| ||||| ||||| || || | |||||||| ||||||| Sbjct 16833 AACGACTATGAAACCGCGCTCAATGCTACCGGTGATACTGGTGCTGACATCCTCGCTCAT 16774 Query 4759 GCTATTTATCAGGTG------ACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAAC 4812 || || ||||||||| | ||| | ||| |||| ||| || |||| ||| Sbjct 16773 GCGATCTATCAGGTGTCTCTCAGCGAATTTGA----AGCG--GACGGCATTATCCTTAAC 16720 Query 4813 CCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGT 4872 ||| ||||||||| || || | |||| || | | ||| || ||| | || Sbjct 16719 CCGGCAGACTGGCACCGGATTGCTCTATTGAAGGATGCTAACGGCAATTACATCCTTGGC 16660 Query 4873 GGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCG 4932 || || ||||| || || || | ||||||| | || || ||| | || | ||| Sbjct 16659 GGGCCGCAGGCGTTTGCCTCCAAGGTGCTGTGGGGGCTTCCGGTTGTTTCTACCACGGCC 16600 Query 4933 CAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGC 4992 || || | || ||||| || || || | || | | | || || ||||| |||||||| Sbjct 16599 CAAGCATCAGGTACCTTCACTGTTGGAGCGTTTGGTCTTGCGTCTCAGGTATGGGATCGT 16540 Query 4993 ATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTG 5052 ||||||||||| | || | ||| | | || || || |||||||| |||||||||||| Sbjct 16539 ATGGATGCCACTATCGAGATCAGCAATCAGGATCGAGACAACTTCGTTAAAAACATGCTG 16480 Query 5053 ACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCC 5096 |||||||||||||||||||| |||| |||| |||||||| || Sbjct 16479 ACCATCCTGTGCGAAGAGCGCTTGGCATTGGCTCATTATCGTCC 16436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126525932532480