Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq477 1187 0.0 seq14 165 2e-36 >seq477 Length=38297 Score = 1187 bits (1316), Expect = 0.0 Identities = 2063/2984 (69%), Gaps = 93/2984 (3%) Strand=Plus/Minus Query 2213 TTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTTCAA 2272 ||| ||||||||| | |||| || || || ||| ||| | || ||||| |||| Sbjct 19374 TTACCGATGAACGTAATATGCAGATCAGCACCGTTTGGTCTTGCATAAGACTGATATCAA 19315 Query 2273 CGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTAAAA 2332 | | || |||| | ||||| ||||| || ||||| | |||||| | ||| | | Sbjct 19314 CCGTGACAGCATCTCTCCCGCTAGATGTGTTTGAAACTGTT---AATGACCAACGTCAGA 19258 Query 2333 AAGT-GGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACATG 2391 |||| ||| || ||||| |||||||| || ||||| | | || ||| | | ||| Sbjct 19257 AAGTCGGAAACGAA-AATCCCCTGGCGCGCCTCCTGCGATTCCGTCCAAATAATTTTATG 19199 Query 2392 ACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCATAT 2451 ||||| | ||||| | || || ||||| ||||| |||||| || || || || || Sbjct 19198 ACCGCGCTTGAATTTCGCGAAGCGATGACAATGCAACTCTGTGCATATGGGAATGCGTAC 19139 Query 2452 GCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTGCC 2511 || | || || || || |||| ||||| ||||||||| | | ||| | | ||| Sbjct 19138 GCCCACGTTGAGCGAAATAGCGTTGGTGATGTGATCAGCATGGTTCCGTTAATGAGCGCC 19079 Query 2512 AATATGGATGTGAAGCTC-GT-----CGGaaaaaaaGTGGTTTATCGCTATCAACGCGAC 2565 |||||||||||| ||| || ||| ||||| || |||| |||||| |||| || Sbjct 19078 AATATGGATGTGCGACTCAGTGATAACGGCAAAAACGTTATTTACCGCTATAAACGAGAT 19019 Query 2566 AGCGAATACGCCGACTTTTCGCAGAAAGAGATTTTTCATCTTAAAGGCTTCGGATTCACC 2625 | |||||||| ||||| || ||||| ||||| ||||| ||||| || || || | | Sbjct 19018 ACGGAATACGCAGACTTCAAGCCTAAAGAAATTTTCCATCTGAAAGGTTTTGGTTTTAAC 18959 Query 2626 GGGCTTGTAGGCCTGTCACCCATTGCTTTTGCCTGT---AAATCGGCAGGTGTGGCAGTT 2682 || || || || ||||| || | || || | || |||||||| |||||||| | Sbjct 18958 GGTCTAGTGGGGCTGTCTCCGTTGGCCTT---CAGTGCGAAATCGGCCGGTGTGGCGATC 18902 Query 2683 GCGATGGAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTC 2742 || ||||| ||| | ||||| || || ||||| || ||||||||||| |||||||| || Sbjct 18901 GCTATGGAAGACAATCAGCGCGAGTTTTTTGCTAATGGCGCCAAGTCACCGCAAATTCTG 18842 Query 2743 TCAACTGGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAA 2802 || | | || ||||| ||| || | ||||| || | ||||| |||||||| Sbjct 18841 ATGACAGATGGCAAGGTGCTTACTAAAGATCAGCGTGGACAACTGGAAGAAAACTTCAAG 18782 Query 2803 GAGATCGCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACA 2862 ||||||||||||||||| || ||||| ||||| |||||||||||| || ||| | || Sbjct 18781 GAGATCGCCGGCGGCCCAGTTAAAAAGCGCCTTTGGATTCTGGAAAGTGGATTTACCACT 18722 Query 2863 TCGGCAATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTA 2922 ||| || || || |||| |||| | ||||| | | | || || ||||||||| Sbjct 18721 CAGGCTATAGGGATATCTCCAGCGGATTCTCAAATGCTTGAAGCGCGTAAGTTTCAGGTA 18662 Query 2923 AGTGAACTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCA 2982 ||||||||||| || | ||| || ||||||||||| || || || ||||||||| || Sbjct 18661 GCCGAACTGGCGCGCTTTTATGGTGTCCCGCCTCACCTGGTAGGGGATGTCGAGAAAACA 18602 Query 2983 ACGAGCTGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAG 3042 || ||||| || || || || || || ||||| ||||||||||||||| | | Sbjct 18601 ACTTCATGGGGTAGCGGTATTGAACAACAAAACCTCGGATTCCTGCAGTACACCTTAAAA 18542 Query 3043 CCCTATATCTCCAGGTGGGAAAACAGCATTCAGCGGTGGCTTATTCCTGCTAAGGATGTT 3102 || ||| | | |||||| |||| ||| |||| ||| | | | | ||| Sbjct 18541 CCTTATCTTGATCGCTGGGAATACAGTATTGAGCGCTGGTTGGTAAAAGATGCCGATCAG 18482 Query 3103 GGCCGCATTCATGCTGAGCACAACCTCGACGGCCTGCTGAGGGGCGATTCGGCATCCCGC 3162 ||| | |||||||||||||| || | ||||| || ||| | || |||||| || |||| Sbjct 18481 GGCAGGATTCATGCTGAGCATAATTTAGACGGTCTACTGCGCGGTGATTCGACAAGCCGC 18422 Query 3163 GCTGCCTTTATGAAGGCAATGGGAGAGGCAGGGCTACGCACCATCAACGAGATGCGACGA 3222 || | || ||| | |||||| | | || | |||||| ||||||| | | ||| Sbjct 18421 GCCTCTTTCATGCAAACAATGGTGAATACTGGTATTCGCACCGTCAACGAAGTCAGGCGA 18362 Query 3223 ACGGACAACCTCCCGCCATTGCCGGGTGGCGATGTGGCAATGCGCCAGTCGCAATACGTG 3282 ||| ||| | || || | || || || ||||| || | ||||||||||| |||| Sbjct 18361 CTGGATAACTTGCCACCGCTTCCCGGCGGAGATGTAGCGACACGCCAGTCGCAGAACGTA 18302 Query 3283 CCGATCACCGATTTAGGAACCAACAAAGAGCCCCGTAATAACGGGGCTTAATTTTTATGG 3342 || || |||||| | |||| | |||||||||||| | | |||||||||||||||||||| Sbjct 18301 CCCATTACCGATCTCGGAAGAACCAAAGAGCCCCGCACTGACGGGGCTTAATTTTTATGG 18242 Query 3343 GGGCCGTAATGCCTGAAATCGTAAAAACGCTGTCCTTCGACGAGACAGAAATCAAATTCA 3402 ||||| | |||||||| || ||||| ||| | |||||| |||||||||| || || | Sbjct 18241 GGGCCATGATGCCTGATATTCAGAAAACCCTGGCGTTCGACCAGACAGAAATAAAGTTTA 18182 Query 3403 CCGGTGACGGTAAACAGGGGATTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATT 3462 |||| |||||| | | || | |||||| ||||||||||| ||||| || || || || | Sbjct 18181 CCGGCGACGGTGATAAAGGCACTTTTGAGGGCTACGCCTCAGTTTTCAACAATACGGACT 18122 Query 3463 CCGATGGCGACATCATTCTGCCCGGGGCGTTTAAAAACGCGCTGGCGAACCAGACCCGAA 3522 |||| || ||||| || ||||| || || || | | | || || | ||||| Sbjct 18121 CCGACGGAGACATTATCCTGCCAGGTGCATTCAGCGGTGTTATTGCTGGTCAAAGCCGAA 18062 Query 3523 AAGTGGCGATGTTTTTTAACCACAGGACGTGGGAACTGCCGGTTGGCAAATGGGACAGCC 3582 | || || ||||| |||||||| |||| | | | || ||||| |||||||| | Sbjct 18061 AGGTCGCCATGTTCTTTAACCATCAGACGCGCGCGATCCCTGTTGGTAAATGGGATTCCA 18002 Query 3583 TGGCTGAGGACGAAAAAGGCCTGTATGTGCGCGGTCAACTTACCCCAGGACACAGCGGCG 3642 || ||||||||| ||||| |||| ||| ||||||||||| || ||||||| || Sbjct 18001 TGCATGAGGACGATAAAGGGCTGTTTGTTCGCGGTCAACTCACGCCAGGACTTAGTCTGT 17942 Query 3643 CCGCTGACCTGAAAGCGGCAATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTT 3702 | | |||||||||||||||||| | ||||| || |||||||||||||| || || || | Sbjct 17941 CTGAGGACCTGAAAGCGGCAATGAAACACGGCACCGTTGAAGGTATGTCAGTCGGTTTCT 17882 Query 3703 CCGTTTCGAAAGACGATTACACCATCATTCCAACAGGCCGCATTTTTAAGAATATCCAGG 3762 |||| || ||||| || || | | |||| |||||| || || || Sbjct 17881 CCGTCGGCCCCGATGATTATACAGTCGGCACTTCCGGCCTCATTTTCAAAAACATTTCTT 17822 Query 3763 CTCTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCA 3822 |||||| |||||||| |||||||||||||| |||||||| | ||||||| | | |||| Sbjct 17821 ATCTGCGGGAAATCAGTGTCTGCACTTTCCCGGCCAACGAGCTGGCTGGCGTGACCGCCA 17762 Query 3823 TGAAAAGTGTCGATGGTATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAG 3882 |||||||| |||| || || |||| |||||||| | ||| ||||||||||||||||| Sbjct 17761 TGAAAAGTATCGACGGCATCAAAACCATTCGTGACGCGGAAGCCTGGCTGAGGGATTCAG 17702 Query 3883 TCGG------CCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGA 3936 |||| || | | || | |||||| || |||||||| ||||||| || Sbjct 17701 TCGGTTTGACCCGCTCTGAAGCGCAGGCATTT------ATTGCCCGCGTTAAGTCCGCAG 17648 Query 3937 TTCGGAGCGAGTCCGAGGGCGACGGAAACGAAGCACAAATAAACGCTCTGCTTCAGAGCA 3996 ||||||||||||| ||| || | || |||| ||| ||| ||| Sbjct 17647 GCCGGAGCGAGTCCGGTAGCGGCG------------ACATTGACGCGCTGGCACAGCGCA 17600 Query 3997 TCAAATCTTTCCCTTCTAA-CTTAGG--TAAATAA---------TTATGTCTGAACTCG- 4043 | || || || | |||| || || | |||| |||||||||| | | Sbjct 17599 TAAACTCATTTGCCGCTAATCTGCGGAATGCATAACGGAGCACCATATGTCTGAATTAGC 17540 Query 4044 CTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAGAAAATGACCCAGCTTTTCGATGCGC 4103 | ||| | ||||||| || || | ||||| | || | | | || |||| Sbjct 17539 CACTC-TCGAAAAAGCGATTGAGAATTCCCAAAAAGAAGTTAAGGAACTCATCGA----- 17486 Query 4104 AGAA-AGCAGAAATCGA--AAGCACA--GGCCAGGTTTCCAAACAGTTGCAGTCCGACCT 4158 |||| ||| ||||| | || || | ||| | || || | ||||| |||| || Sbjct 17485 AGAACAGCGTAAATCCATCAATCAGAACGGCGAAATTAACACGAAACTGCAGGCCGATCT 17426 Query 4159 GATGAAAGTACAGGAAGAGCTGACCAAATCCGGCACTCGCCTCTTCGATCTGGAACAGAA 4218 || |||| ||||||||||||| | ||||||||||||| |||||||| || || || Sbjct 17425 GACCAAAGCTCAGGAAGAGCTGAAGACCACCGGCACTCGCCTGTTCGATCTTGAGCAAAA 17366 Query 4219 ACTGGCATCCGGCGCTGAGAATCCTGGTGAGAAGAAATCCTTCTCTGAACGGGCTGCTGA 4278 ||| || | | | ||| || | | || || || | || || | | || Sbjct 17365 ACTTGCTGGTAACTCACCGGATCAGACTGCGCAAAAGTCATTTGCCGAGCGCGTGTCCGA 17306 Query 4279 AGAGCTTATTAAGTCATGGGACGGTAAACAGGGCACCTTTG---GCGCTAAAACGTTTAA 4335 ||| || || || ||||| || | ||||| | | || | ||| | Sbjct 17305 AGACCTGATGAAAGGCTGGGATGGCTCCC---GCACCAAAGCGAAAGTTACCAGCTTTGA 17249 Query 4336 CAAGTCACTAGGCAGTGACGCTGATTCGGCTGGCTCACTGATCCAGCCTATGCAGATCCC 4395 || | | || | ||| | || || || | ||| ||||||| ||| || || Sbjct 17248 TAAAGCGATCGGTTCCGGCGCAGCGTCAGCGGGTGCCCTGGTCCAGCCGCAGCAAATGCC 17189 Query 4396 AGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATTCGTGATCTGCTGGCTCAGGGCCG 4455 ||| || | |||||||| ||||| ||||| ||| ||||||| || ||||| || ||||| Sbjct 17188 AGGTATTCTGATGCCAGGGCTGCGTCGTCTGACCGTTCGTGACCTTCTGGCACAAGGCCG 17129 Query 4456 CACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAGGTGTTTACCAATAACGCCGACGT 4515 | | |||||||||| |||||||| |||||||| | ||||| ||| ||||| | | Sbjct 17128 TATTACCAGTAACGCGCTGGAATACGTGCGTGAGAATGTGTTCACC---AACGCTGCTGC 17072 Query 4516 G---GTGGCAGAGAAAGCA--CTGAAGCCAGAATCGGATATCACCTTCAGCAAACAAACC 4570 | ||||| ||| ||| || ||||| ||| | |||||||||| |||| |||| Sbjct 17071 GCCAGTGGC--GGAAGGCACCCTCAAGCCTGAAAGTAACATCACCTTCACCAAAGAAACG 17014 Query 4571 GCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGTCAGGTGATGGATGATGCG 4630 ||||||||||| |||||||| |||||| | ||||| || || ||| | ||||| ||||| Sbjct 17013 GCGAACGTGAAAACCATCGCCCACTGGATCCAGGCGTCGCGACAGATCATGGACGATGCT 16954 Query 4631 CCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGCCTGGCACTGAAGGAAGAG 4690 || ||| ||||||||||| ||| |||| | ||||| || ||||| ||| |||||| Sbjct 16953 CCGGCGCTGCAGTCCTACATCAACTCCCGCATGATGTATGGGCTGGCGCTGGTGGAAGAA 16894 Query 4691 GGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAAGGGCTGAACAAAGTGGCA 4750 ||| |||| ||||| || || || || ||||| ||| | || | ||| ||| || Sbjct 16893 AATCAGATGCTAAACGGTGATGGGACTGGCGATAATCTGCAGGGCATTAACGTAGTCGCG 16834 Query 4751 ACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCAC 4810 | || |||||| ||| |||| ||||| ||||| || || | |||||||| ||||||| Sbjct 16833 AACGACTATGAAACCGCGCTCAATGCTACCGGTGATACTGGTGCTGACATCCTCGCTCAT 16774 Query 4811 GCTATTTATCAGGTG------ACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAAC 4864 || || ||||||||| | ||| | ||| |||| ||| || |||| ||| Sbjct 16773 GCGATCTATCAGGTGTCTCTCAGCGAATTTGA----AGCG--GACGGCATTATCCTTAAC 16720 Query 4865 CCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGT 4924 ||| ||||||||| || || | |||| || | | ||| || ||| | || Sbjct 16719 CCGGCAGACTGGCACCGGATTGCTCTATTGAAGGATGCTAACGGCAATTACATCCTTGGC 16660 Query 4925 GGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCG 4984 || || ||||| || || || | ||||||| | || || ||| | || | ||| Sbjct 16659 GGGCCGCAGGCGTTTGCCTCCAAGGTGCTGTGGGGGCTTCCGGTTGTTTCTACCACGGCC 16600 Query 4985 CAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGC 5044 || || | || ||||| || || || | || | | | || || ||||| |||||||| Sbjct 16599 CAAGCATCAGGTACCTTCACTGTTGGAGCGTTTGGTCTTGCGTCTCAGGTATGGGATCGT 16540 Query 5045 ATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTG 5104 ||||||||||| | || | ||| | | || || || |||||||| |||||||||||| Sbjct 16539 ATGGATGCCACTATCGAGATCAGCAATCAGGATCGAGACAACTTCGTTAAAAACATGCTG 16480 Query 5105 ACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCC 5148 |||||||||||||||||||| |||| |||| |||||||| || Sbjct 16479 ACCATCCTGTGCGAAGAGCGCTTGGCATTGGCTCATTATCGTCC 16436 >seq14 Length=60807478 Score = 165 bits (182), Expect = 2e-36 Identities = 104/111 (94%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 31067 CACGACAAGTTGCTTCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG 31126 || ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 38780450 CATGACTAGT-GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG 38780508 Query 31127 AACAAATCCAGATGGAATTCTGAGGTCATTACTGGATCAATCCACAGGAGT 31177 |||||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct 38780509 AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT 38780559 Score = 165 bits (182), Expect = 2e-36 Identities = 104/111 (94%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 31067 CACGACAAGTTGCTTCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG 31126 || ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 38782005 CATGACTAGT-GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG 38781947 Query 31127 AACAAATCCAGATGGAATTCTGAGGTCATTACTGGATCAATCCACAGGAGT 31177 |||||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct 38781946 AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT 38781896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132765830570880