Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq82 141 1e-28 >seq82 Length=657493 Score = 141 bits (156), Expect = 1e-28 Identities = 298/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 146563 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 146622 |||||||| || ||||||| | ||| || | | ||||| |||| || |||| || Sbjct 460830 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 460889 Query 146623 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCA 146682 || | || | | |||| | ||||| |||||| || |||||| | | ||| || || Sbjct 460890 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 460949 Query 146683 CCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 146741 || || | || || ||||||||||| ||||| |||| | || | | | ||| | || Sbjct 460950 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATAAAA 461008 Query 146742 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 146801 |||||| || |||||| |||| ||| | ||| | |||| | |||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 146802 CATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTT 146861 |||||||||||| |||||| || || |||| | |||||| | || | | | Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 146862 TACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTG 146921 ||||||||| || ||| |||| ||| |||||| | ||| || || || || || Sbjct 461129 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 461188 Query 146922 GCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA-TCTGACGTTTAG 146980 ||||| ||||| | || || | ||||||||| || || | ||||| | ||| || | Sbjct 461189 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT-G 461247 Query 146981 ATACGGCATTATAGAAACG 146999 | | ||||||||| ||||| Sbjct 461248 AAATGGCATTATAAAAACG 461266 Score = 125 bits (138), Expect = 8e-24 Identities = 260/384 (68%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 143236 TTAATTAATACATCGTCATATAATTTACTAATAGATTCAGCTCGAGCCATGATAGCTTCA 143295 || |||||| |||||||| || | | |||| || ||||||| | | ||| || | Sbjct 459016 TTTATTAAT---TCGTCATAGTATATGCAAATATTTTTAGCTCGATCGTTAATATGTTTA 459072 Query 143296 TCTAGAATAATCTCATCAAAGATTTTACCGGGATCAGAGAACAGATTTCGCATGATATGA 143355 | |||||| |||||||| ||| | ||| | | | ||||| || |||||| Sbjct 459073 TTGGAAATAATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGA 459132 Query 143356 GTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCAACCCATGTATCTAAT 143415 ||||||||||| || |||||||| || |||| |||||| ||| ||| || |||||| Sbjct 459133 GTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAAT 459192 Query 143416 GCTGGGTCAGAAATAAGTGGCATCAATACCGACG-AAGGTGCACGACCTTGGATAGTGTC 143474 | || |||||||| ||| | || | | | | ||| | ||||| |||| ||| Sbjct 459193 TCCGGAATAGAAATAATTGGTA-GAAAAGCAATGTTAGGACTTCTTCCTTGAATAGAGTC 459251 Query 143475 TAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGGTGAGGAAGAAGGCG 143534 |||||||| |||||||| |||||| || |||||||| || || || | | | Sbjct 459252 TAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT 459311 Query 143535 GTCGAATTGGCCTTTATCTGTCATTAGATTAACTTCTTCAGGTCGCCaaaaaaaTCCAAG 143594 | || | | ||||| |||| | ||||||||||| ||||||||| || Sbjct 459312 TTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAG 459371 Query 143595 TTGCTTTTCTGTCAATTCTTCAAA 143618 ||| ||||| | |||| |||||| Sbjct 459372 TTGTTTTTCAATTAATTTTTCAAA 459395 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 74897 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 74956 || ||| |||||| | ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 216852 TATTTTAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 216793 Query 74957 TAACCATCTGAGCTAAAGGGCC 74978 | |||| ||||||||||||||| Sbjct 216792 TTACCA-CTGAGCTAAAGGGCC 216772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 145630 GGAACTACTTGGTTAAAGCTTCCTTCTTTAGATTCTTTAACACTTACAGGACCACGTGGG 145689 ||||||||||| || |||| ||||| ||| |||||| ||| | | ||| | ||| Sbjct 459879 GGAACTACTTGACGTAATATTCCATCTTTTGATACTTTAATACTAATAAAACCTCTTGGT 459938 Query 145690 GGCTCAATACCATTGGTGCTGTTTGATACTTGACTGCTTGATTCACACGGCATAAGTGCT 145749 || ||||| ||||| || || |||| |||| | || ||| | ||||||||||| Sbjct 459939 GGTTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCATAAGTGCA 459998 Query 145750 GATAATGTTGAGTTTCT 145766 ||||||||||||||||| Sbjct 459999 GATAATGTTGAGTTTCT 460015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540051510954240