Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019912.1 Length=36932 Score E Sequences producing significant alignments: (Bits) Value seq341 190 5e-44 >seq341 Length=107858 Score = 190 bits (210), Expect = 5e-44 Identities = 347/503 (69%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 16332 TGAAGTCACCGTATGATTTTTATATTACACCGGATGAATATGAGAGAGCGGAGAGGAACG 16391 |||| || | |||||||||||| |||| || || |||||||| | ||| | | | | | Sbjct 12745 TGAAATCTGCATATGATTTTTATGTTACTCCAGAAGAATATGAAATAGCAGCTAAGCATG 12804 Query 16392 GGATTAACCGTAGAGTGTTTAATGAAAGGGTTAGGAATCTCGGG-TGGGATAAGGTTACT 16450 | |||| ||| | || ||| ||| |||| ||| ||||| |||||||| | | Sbjct 12805 GAATTAGTCGTGATCTATTAAATCGTAGGATTAGAAAT-TCGGGTTGGGATAAAGAGGAT 12863 Query 16451 GCGATGACAAAACCAGTGAGAGGTAGCAATCCGACAGGTTGGTGTAAAGTGAGAGAAATA 16510 |||||||| |||||| | | ||| | ||||| ||| || || | ||||||| Sbjct 12864 GCGATGACTAAACCATCTA---TTCATAATGCAACAGGGTGGAAAAATGTAAAAGAAATA 12920 Query 16511 GCCTTGAAAAATGGAATTAGACGTCAAACGTATTACGCAAGAATGAAAAAAGGATGGAAT 16570 || || ||||| |||||| || || ||| || ||||| |||| | |||| Sbjct 12921 GCTTTAAAAAACGGAATTTCTCGAGCGACATATGCAGCTAGAATAAAAAGAAACTGGAGA 12980 Query 16571 CTGATAGATGCGATAAGTAAACCACCTATTAATAAATATCAAGCGTTGAGGTTAGCGGAG 16630 | || |||||||||| | ||| ||||| ||||||| |||||||| |||||| ||| Sbjct 12981 ATAATTGATGCGATAACGACACCTCCTATAGATAAATACCAAGCGTTAGAGTTAGCTGAG 13040 Query 16631 GAAGCTAATTATTGGAACG--GAAATAAAGTACTGAGTGATGAACAAGCGAAGATAGCTT 16688 ||| ||||| | || | ||| ||||| | | |||||||||| ||| ||||| | Sbjct 13041 AAAGTTAATTCT--AAATGTCAAAACAAAGTGTTAAATGATGAACAAATGAAAATAGCGT 13098 Query 16689 CGTTGAATGGAGTGAGCTATAGATTGGCTCGCGAGAGAATTAAACGTTTAAAATGGCCCG 16748 | || || || | ||||||| ||||| || || ||||| ||| ||||||| | Sbjct 13099 CATTAAACGGGATTTGCTATAGGTTGGCACGTGACAGAATAAAAAAGCAAAAATGGAGTG 13158 Query 16749 TTGAGGAAGCTATTACCACACCAGTTTTAACAAAAGAAGAATGTGGAAAAAGAGGGAAAG 16808 | || || || || || || || || ||||||| ||||| || | || || || |||| Sbjct 13159 TAGAAGAGGCGATAACAACCCCTGTGTTAACAAGGGAAGAGTGCGCAAGAAAAGCTAAAG 13218 Query 16809 AAGCATCTTATTGGTGTAAATTG 16831 || | || |||||| |||| || Sbjct 13219 AATCCTCCTATTGGACTAAAATG 13241 Score = 190 bits (210), Expect = 5e-44 Identities = 347/503 (69%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 16332 TGAAGTCACCGTATGATTTTTATATTACACCGGATGAATATGAGAGAGCGGAGAGGAACG 16391 |||| || | |||||||||||| |||| || || |||||||| | ||| | | | | | Sbjct 63302 TGAAATCTGCATATGATTTTTATGTTACTCCAGAAGAATATGAAATAGCAGCTAAGCATG 63361 Query 16392 GGATTAACCGTAGAGTGTTTAATGAAAGGGTTAGGAATCTCGGG-TGGGATAAGGTTACT 16450 | |||| ||| | || ||| ||| |||| ||| ||||| |||||||| | | Sbjct 63362 GAATTAGTCGTGATCTATTAAATCGTAGGATTAGAAAT-TCGGGTTGGGATAAAGAGGAT 63420 Query 16451 GCGATGACAAAACCAGTGAGAGGTAGCAATCCGACAGGTTGGTGTAAAGTGAGAGAAATA 16510 |||||||| |||||| | | ||| | ||||| ||| || || | ||||||| Sbjct 63421 GCGATGACTAAACCATCTA---TTCATAATGCAACAGGGTGGAAAAATGTAAAAGAAATA 63477 Query 16511 GCCTTGAAAAATGGAATTAGACGTCAAACGTATTACGCAAGAATGAAAAAAGGATGGAAT 16570 || || ||||| |||||| || || ||| || ||||| |||| | |||| Sbjct 63478 GCTTTAAAAAACGGAATTTCTCGAGCGACATATGCAGCTAGAATAAAAAGAAACTGGAGA 63537 Query 16571 CTGATAGATGCGATAAGTAAACCACCTATTAATAAATATCAAGCGTTGAGGTTAGCGGAG 16630 | || |||||||||| | ||| ||||| ||||||| |||||||| |||||| ||| Sbjct 63538 ATAATTGATGCGATAACGACACCTCCTATAGATAAATACCAAGCGTTAGAGTTAGCTGAG 63597 Query 16631 GAAGCTAATTATTGGAACG--GAAATAAAGTACTGAGTGATGAACAAGCGAAGATAGCTT 16688 ||| ||||| | || | ||| ||||| | | |||||||||| ||| ||||| | Sbjct 63598 AAAGTTAATTCT--AAATGTCAAAACAAAGTGTTAAATGATGAACAAATGAAAATAGCGT 63655 Query 16689 CGTTGAATGGAGTGAGCTATAGATTGGCTCGCGAGAGAATTAAACGTTTAAAATGGCCCG 16748 | || || || | ||||||| ||||| || || ||||| ||| ||||||| | Sbjct 63656 CATTAAACGGGATTTGCTATAGGTTGGCACGTGACAGAATAAAAAAGCAAAAATGGAGTG 63715 Query 16749 TTGAGGAAGCTATTACCACACCAGTTTTAACAAAAGAAGAATGTGGAAAAAGAGGGAAAG 16808 | || || || || || || || || ||||||| ||||| || | || || || |||| Sbjct 63716 TAGAAGAGGCGATAACAACCCCTGTGTTAACAAGGGAAGAGTGCGCAAGAAAAGCTAAAG 63775 Query 16809 AAGCATCTTATTGGTGTAAATTG 16831 || | || |||||| |||| || Sbjct 63776 AATCCTCCTATTGGACTAAAATG 63798 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1402 ACGTATTGAACATTCAAAAAATATTTGTACGGCCCTAGTTGGTTTTGCGCGCGGTGAAGA 1461 |||||||||| | ||| |||||||||||| || || || || |||| ||||||| Sbjct 40025 ACGTATTGAAAACACAAGAAATATTTGTACTGCACTTGTGGGGTTTGTTAAGGGTGAAGG 40084 Query 1462 CAATGAAGTAATCACAATCGAAAAGATCAATAACGGATCGCCTTACATTGTTGATAATGA 1521 | || ||||| ||||| |||| || ||||| || | ||| |||||||| |||| | | Sbjct 40085 CGATTCCGTAATTACAATTGAAAGTATAAATAAAGGGTTGCCATACATTGTAGATACTCA 40144 Query 1522 AGCGTTTCAGCGCTGGAGTGAGAATGGTCAACATAAATACGGTTTCTAT 1570 || ||||||| |||| | | || || |||| || ||||| ||| Sbjct 40145 GGCATTTCAGCTTTGGAATAAAAAGGGGTTTCATAGATTTGGTTTTTAT 40193 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1402 ACGTATTGAACATTCAAAAAATATTTGTACGGCCCTAGTTGGTTTTGCGCGCGGTGAAGA 1461 |||||||||| | ||| |||||||||||| || || || || |||| ||||||| Sbjct 90437 ACGTATTGAAAACACAAGAAATATTTGTACTGCACTTGTGGGGTTTGTTAAGGGTGAAGG 90496 Query 1462 CAATGAAGTAATCACAATCGAAAAGATCAATAACGGATCGCCTTACATTGTTGATAATGA 1521 | || ||||| ||||| |||| || ||||| || | ||| |||||||| |||| | | Sbjct 90497 CGATTCCGTAATTACAATTGAAAGTATAAATAAAGGGTTGCCATACATTGTAGATACTCA 90556 Query 1522 AGCGTTTCAGCGCTGGAGTGAGAATGGTCAACATAAATACGGTTTCTAT 1570 || ||||||| |||| | | || || |||| || ||||| ||| Sbjct 90557 GGCATTTCAGCTTTGGAATAAAAAGGGGTTTCATAGATTTGGTTTTTAT 90605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118058870886528