Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq477 1168 0.0 >seq477 Length=38297 Score = 1168 bits (1294), Expect = 0.0 Identities = 2053/2980 (69%), Gaps = 85/2980 (3%) Strand=Plus/Plus Query 13469 GGGCGATAGTGCGCCAGCGCCAGGCGCTCTTCACACAGGATTGTCAGCATGTTTTTCACG 13528 || ||||| || |||| |||| ||||||||| |||||||| |||||||||||||| ||| Sbjct 16436 GGACGATAATGAGCCAATGCCAAGCGCTCTTCGCACAGGATGGTCAGCATGTTTTTAACG 16495 Query 13529 AAGTTATCGCGGTCTTCACGGCTGACTTCCACGGTGGCATCCATGCGATCCCACACCTGC 13588 ||||| || || || | | ||||| || | ||||||||||| |||||||| ||||| Sbjct 16496 AAGTTGTCTCGATCCTGATTGCTGATCTCGATAGTGGCATCCATACGATCCCATACCTGA 16555 Query 13589 GAGGCCATATCAAAACCGCCCACCGTAAAGGTGCCAGCGGCCTGCGCCTTAGTCGGAACC 13648 || || | | |||| | || || || ||||| || | || || ||| | || | ||| Sbjct 16556 GACGCAAGACCAAACGCTCCAACAGTGAAGGTACCTGATGCTTGGGCCGTGGTAGAAACA 16615 Query 13649 ACTGGCAGGCCCCACATGATGTTGCTGGTAAACGCCTGAGGACCACCGAAGATATAGCGG 13708 || || || ||||||| | ||| || ||||||||| || || || | ||| || | Sbjct 16616 ACCGGAAGCCCCCACAGCACCTTGGAGGCAAACGCCTGCGGCCCGCCAAGGATGTAATTG 16675 Query 13709 CCTTCGTTGTCTTTCAGCAGCGCGATGTTGTGCCAGTCGCGCGGGTTCAGGACGATACCG 13768 || | || |||| || || || ||||||||| |||||| |||| || ||| Sbjct 16676 CCGTTAGCATCCTTCAATAGAGCAATCCGGTGCCAGTCTGCCGGGTTAAGGATAATGCCG 16735 Query 13769 GAAGCGCTAAACTC----AGACTCTGTCACCTGGTAAATAGCGTGAGCGATAATGTCAGC 13824 || ||| || ||| | |||||| || || || ||||||| |||||||| Sbjct 16736 TCCGCTTCAAATTCGCTGAGA----GACACCTGATAGATCGCATGAGCGAGGATGTCAGC 16791 Query 13825 GCGGGTGTCGCCAGTGGCATTCAGCGAGGTGTCGTAGGCGGTTGCCACTTTGTTCAGACC 13884 | || || || || ||||| |||| ||| || ||| || | || ||| ||| | || Sbjct 16792 ACCAGTATCACCGGTAGCATTGAGCGCGGTTTCATAGTCGTTCGCGACTACGTTAATGCC 16851 Query 13885 TTCCAGGTTATCCCCGGTACCGTCGCCGTTCAGCAGCTGGCCTTCTTCCTTCAGCGCCAG 13944 | ||| ||||| || || || || ||||| |||| ||| ||||||| ||||||||| Sbjct 16852 CTGCAGATTATCGCCAGTCCCATCACCGTTTAGCATCTGATTTTCTTCCACCAGCGCCAG 16911 Query 13945 ACCGTACATGAGGCGGTTGTTGACGTATGACTGCAGCATTGGCGCATCGTCCATAACCTG 14004 || ||||| | |||| ||||| ||| ||||||||| || ||||||||||| | ||| Sbjct 16912 CCCATACATCATGCGGGAGTTGATGTAGGACTGCAGCGCCGGAGCATCGTCCATGATCTG 16971 Query 14005 ACGTGACGCCTGCACCCAGTGGGCGATGGTCTTCACGTTTGCGGTCTGCTTGCTGAAGGT 14064 || |||||||| | ||||||||||||||| |||||||| || || | ||| ||||||| Sbjct 16972 TCGCGACGCCTGGATCCAGTGGGCGATGGTTTTCACGTTCGCCGTTTCTTTGGTGAAGGT 17031 Query 14065 AATATCCGATTCAGGTTTCAGCG--CCTTCTCGGCCAC---CACATCGGCGTTATTGGTA 14119 || | |||||| || || | ||||| ||||| | || | ||||| ||| Sbjct 17032 GATGTTACTTTCAGGCTTGAGGGTGCCTTCC--GCCACTGGCGCAGCAGCGTT---GGTG 17086 Query 14120 AACACTTCTTCACGGACATATTCCAGGGAGTTACTGGAAATGCGGCCCTGCGCCAGCAGA 14179 ||||| | ||||| || |||||||| | |||||||| ||| ||||| || ||||| || Sbjct 17087 AACACATTCTCACGCACGTATTCCAGCGCGTTACTGGTAATACGGCCTTGTGCCAGAAGG 17146 Query 14180 TCACGAATGGTCAGACGGCGCAGGCCCGGCATGATGATGCCTGGAACCTGCATCGGCTGG 14239 ||||||| ||||||||| ||||| || ||||| | || ||||| | ||| ||||||| Sbjct 17147 TCACGAACGGTCAGACGACGCAGCCCTGGCATCAGAATACCTGGCATTTGCTGCGGCTGG 17206 Query 14240 ATCAGGCTACCTGCAGAATCAGAATCACTGCCCAGCGACTTGTTAAAGGT------TTTC 14293 | |||| ||| || || | | | || | || || | |||| | |||| Sbjct 17207 ACCAGGGCACCCGCTGACGCTGCGCCGGAACCGATCGCTTTATCAAAGCTGGTAACTTTC 17266 Query 14294 GCGTCGAAGCTGCCTTTGCTGCCGTTCCAGGACTTCTGCAGTTCTTCCGCTGCGCGTTCG 14353 || | | || | ||| | |||| ||| ||| ||||| | |||| ||| Sbjct 17267 GCTTTGGTGCGGGA------GCCATCCCAGCCTTTCATCAGGTCTTCGGACACGCGCTCG 17320 Query 14354 GAGAAGGATTTCTTCTCACCCGGATT---TTCGGCACCGGAGGCCAGTTTCTGCTCAAGA 14410 | || || || | | || | ||| | | ||| | | ||||| ||||||||| Sbjct 17321 GCAAATGACTTTTGCGCAGTCTGATCCGGTGAGTTACCAG---CAAGTTTTTGCTCAAGA 17377 Query 14411 TCGAAGAGGCGAGTGCCGGATTTGGTCAGTTCTTCCTGTACTTTCGCAAGGTCCGACTGC 14470 ||||| ||||||||||||| | |||| |||||||| |||| | || || | |||| Sbjct 17378 TCGAACAGGCGAGTGCCGGTGGTCTTCAGCTCTTCCTGAGCTTTGGTCAGATCGGCCTGC 17437 Query 14471 AGCTGCTTAGAAACCTTGCCAGTGCTTTCGATTTCTGCTTT----CTGGGCATCGAAAAG 14526 || | | | || | ||| || || |||| || || ||| | |||| || Sbjct 17438 AGTTTCGTGTTAATTTCGCC-GTTCT---GATTGATGGATTTACGCTGTTCTTCGATGAG 17493 Query 14527 CTGGGACATTTTCTGCTGTGACTCTTCGATGGCTTTTTGAATGAGAG-CGAGTTCAGACA 14585 | | || | || || | || || ||||||| | ||| | | | |||||||| Sbjct 17494 TTCCTTAACTTCTTTTTGGGAATTCTCAATCGCTTTTTCGA-GAGTGGCTAATTCAGACA 17552 Query 14586 TAA---------TTA---ATTACCTAAATTAGAAGGGAAAGATTTGATGCTCTGAAGCAG 14633 || ||| ||| | | ||||| | || || || |||| ||| ||| Sbjct 17553 TATGGTGCTCCGTTATGCATTCCGCAGATTAGCGGCAAATGAGTTTATGCGCTGTGCCAG 17612 Query 14634 AGCGTTGATTTGTGCTTCGTTTCCGTCGCCTTCGGACTCGCTCCGAATCGCTGACTTAAA 14693 |||| || | || ||| ||||||||||||| || ||||||| Sbjct 17613 CGCGTCAATGT------------CGCCGCTACCGGACTCGCTCCGGCCTGCGGACTTAAC 17660 Query 14694 CCGGGCTATTAACCCAACTGCCTGTGATTTGGTGAGCCCGACTGAATCCCTCAGCCAGTT 14753 ||||| || || | || | || ||| | ||||||||||||||||||||| Sbjct 17661 GCGGGCAATAAATGCCTGCGCTTCAGAGCGGGTCAAACCGACTGAATCCCTCAGCCAGGC 17720 Query 14754 CTCCACATCACGGATCGTTTCAATGCCATCGACACTTTTCATGGCTGCGATGCCAGCCTG 14813 ||| | ||||| || |||| ||||| |||| |||||||||||| | | ||||||| | Sbjct 17721 TTCCGCGTCACGAATGGTTTTGATGCCGTCGATACTTTTCATGGCGGTCACGCCAGCCAG 17780 Query 14814 TTCGTTGGCGGGGAAAGTGCAGACGCTGATTTCGCGCAGAGCCTGGATATTCTTAAAAAC 14873 |||||||| |||||||||||||| |||||||| |||||| || || || |||| Sbjct 17781 CTCGTTGGCCGGGAAAGTGCAGACACTGATTTCCCGCAGATAAGAAATGTTTTTGAAAAT 17840 Query 14874 GCGTCCTGTTGGAATGATGGTGTAATCGTCTTTCGCAACGGAAAAGCCAACCGACATACC 14933 | | || | | || || ||||| || | ||||| || || || |||||||| Sbjct 17841 GAGGCCGGAAGTGCCGACTGTATAATCATCGGGGCCGACGGAGAAACCGACTGACATACC 17900 Query 14934 TTCAACCGTACCGTGCTGCATTGCCGCTTTCAGGTCGGCGGCGCCGCTGTGCCCTGGGGT 14993 |||||| || ||||| | |||||||||||||||||| | | || | ||||| || Sbjct 17901 TTCAACGGTGCCGTGTTTCATTGCCGCTTTCAGGTCCTCAGACAGACTAAGTCCTGGCGT 17960 Query 14994 AAGTTGACCGCGCACATACAGGCCTTTTTCGTCTTCGGCCAGGCTGTCCCATTTACCAAC 15053 ||||||||||| ||| |||| ||||| ||||| || || | |||||||||||||| Sbjct 17961 GAGTTGACCGCGAACAAACAGCCCTTTATCGTCCTCATGCATGGAATCCCATTTACCAAC 18020 Query 15054 CGGCAGCTCCCACGTCTTGTGGTTGAAAAACATCGCCACTTTTCGGGTCTGGTTCGCCAG 15113 || | | | | ||||| ||||| || ||||| || || |||||| | || || | Sbjct 18021 AGGGATCGCGCGCGTCTGATGGTTAAAGAACATGGCGACCTTTCGGCTTTGACCAGCAAT 18080 Query 15114 TGCGTTTTTAAACGCCCCGGGCAGAATGATGTCTCCGTCGGAATCGGTGTTATTAAAAAC 15173 | | || || || ||||| || |||||||||||||| || || || || ||||| Sbjct 18081 AACACCGCTGAATGCACCTGGCAGGATAATGTCTCCGTCGGAGTCCGTATTGTTGAAAAC 18140 Query 15174 AGAGGCATAACCTTCAAAAATTCCCTGTTTACCGTCACCGGTGAATTTGATTTCTGTCTC 15233 ||||| || || |||||| | || | | |||||| ||||| || || |||||||||| Sbjct 18141 TGAGGCGTAGCCCTCAAAAGTGCCTTTATCACCGTCGCCGGTAAACTTTATTTCTGTCTG 18200 Query 15234 GTCGAAGGACAGCGTTTTTACGATCTCAGGCATTACGGCCCCCATAAAAATTAAGCCCCG 15293 |||||| | ||| ||||| || |||||||| | |||||||||||||||||||||||| Sbjct 18201 GTCGAACGCCAGGGTTTTCTGAATATCAGGCATCATGGCCCCCATAAAAATTAAGCCCCG 18260 Query 15294 TTATTACGGGGCTCTTTGTTGGTTCCTAAATCGGTGATCGGCACGTATTGCGACTGGCGC 15353 | | | |||||||||||| | |||| | |||||| || || |||| ||||||||||| Sbjct 18261 TCAGTGCGGGGCTCTTTGGTTCTTCCGAGATCGGTAATGGGTACGTTCTGCGACTGGCGT 18320 Query 15354 ATTGCCACATCGCCACCCGGCAATGGCGGTAGGTTGTCCGTTCGTCGCATCTCGTTGATG 15413 | || ||||| || || || | || || | ||| ||| ||| | | ||||||| | Sbjct 18321 GTCGCTACATCTCCGCCGGGAAGCGGTGGCAAGTTATCCAGTCGCCTGACTTCGTTGACG 18380 Query 15414 GTGCGTAGCCCTGCCTCTCCCATTGCCTTCATAAAGGCTGCGCGGGATGCCGAATCGCCC 15473 ||||| | || | | |||||| | ||| || | |||||| || |||||| || Sbjct 18381 GTGCGAATACCAGTATTCACCATTGTTTGCATGAAAGAGGCGCGGCTTGTCGAATCACCG 18440 Query 15474 CTCAGCAGGCCGTCGAGGTTGTGCTCAGCATGAATGCGTCCAACATCCTTAGCAGGAATA 15533 | ||| || ||||| | || |||||||||||||| | || ||| | | | Sbjct 18441 CGCAGTAGACCGTCTAAATTATGCTCAGCATGAATCCTGCCCTGATCGGCATCTTTTACC 18500 Query 15534 AGCCACCGCTGAATGCTGTTTTCCCACCGGGAGATATAGGGCTGCAGGGTGTACTGCAGG 15593 | ||| |||| ||| |||| |||||| || | ||| || | | ||||||||||||| Sbjct 18501 AACCAGCGCTCAATACTGTATTCCCAGCGATCAAGATAAGGTTTTAAGGTGTACTGCAGG 18560 Query 15594 AAGCCTAGATTCTGCTGCTCGATGCCCGATCCCCAGCTCGTTGATTTCTCGACGTCGCCG 15653 || || || || || || || || || ||||| |||| ||||||||| || || Sbjct 18561 AATCCGAGGTTTTGTTGTTCAATACCGCTACCCCATGAAGTTGTTTTCTCGACATCCCCT 18620 Query 15654 ACAAGGTGAGGCGGTACGCCAAAGAATCGCGCCAGTTCACTTACCTGAAATTTTCGTGAC 15713 || ||||||||||| || ||| | || ||||||||||| ||||||||| || || | Sbjct 18621 ACCAGGTGAGGCGGGACACCATAAAAGCGCGCCAGTTCGGCTACCTGAAACTTACGCGCT 18680 Query 15714 GCCATCATTTCGGCATCCTGAGGCGTTACGCCAATTGCCGATGTGGAAAATCCCGCTTCC 15773 | | ||||| | |||| || | || || || ||| |||| |||||| |||| Sbjct 18681 TCAAGCATTTGAGAATCCGCTGGAGATATCCCTATAGCCTGAGTGGTAAATCCACTTTCC 18740 Query 15774 AGAATCCAGAGGCGTTTTTTAACCGGACCGCCTGCTATCTCTTTGAAGTTCTCTTCGACC 15833 |||||||| ||||| |||||||| || ||||| || ||||| |||||||| ||||| | Sbjct 18741 AGAATCCAAAGGCGCTTTTTAACTGGGCCGCCGGCGATCTCCTTGAAGTTTTCTTCCAGT 18800 Query 15834 TGCGAGCGCTGCTGTTCAGTTAGCACTTTTTCGCCGGTTGAGAGGATTTGCGGAGACTTG 15893 || ||||| | || ||| ||||| || | | || || |||||||| |||||| Sbjct 18801 TGTCCACGCTGATCTTTAGTAAGCACCTTGCCATCTGTCATCAGAATTTGCGGTGACTTG 18860 Query 15894 GCGCCGTTGGCAAAGAAATCTCGCTGCTGGTCCTCCATCGCAACTGCTACACCTGCCGAT 15953 ||||| || ||||| || || ||||| | ||| ||||| || | || ||||| |||||| Sbjct 18861 GCGCCATTAGCAAAAAACTCGCGCTGATTGTCTTCCATAGCGATCGCCACACCGGCCGAT 18920 Query 15954 TT---ACAGGCAAAAGCAATTGGTGACAGGCCAACAAGTCCGGTGAATCCGAAGCCTTTA 16010 || || | || || | || ||||| || || || ||| | || || || ||||| Sbjct 18921 TTCGCACTG---AAGGCCAACGGAGACAGCCCCACTAGACCGTTAAAACCAAAACCTTTC 18977 Query 16011 AGGTGAAAAATCTCTCTCTGCGAAAAGTCGGCGTATTCGCTGTCGCGTTGATAGCGATAA 16070 || || ||||| ||| | || ||||| |||||||| | || |||| |||||| ||| Sbjct 18978 AGATGGAAAATTTCTTTAGGCTTGAAGTCTGCGTATTCCGTATCTCGTTTATAGCGGTAA 19037 Query 16071 ACCACtttttttCCG-----AC-GAGTTTCACATCCATATTGGCAGACTGAAGCGGGAGA 16124 | || ||||| ||| || |||| ||||||||||||||| | | ||| | Sbjct 19038 ATAACGTTTTTGCCGTTATCACTGAGTCGCACATCCATATTGGCGCTCATTAACGGAACC 19097 Query 16125 AGGCTGATCACGTCACCCGCGCTGTTGCGGTCCACCAGTGCATATGCGTTACCGTAGAAA 16184 | ||||||||| ||||| |||| || || || || | || || || || || || | Sbjct 19098 ATGCTGATCACATCACCAACGCTATTTCGCTCAACGTGGGCGTACGCATTCCCATATGCA 19157 Query 16185 CAGAGCTGCATCGTCATGGCCTCCCTGAATTCCTGGGCGGTCATGTACTGATTCGGTGAG 16244 ||||| ||||| ||||| || || | ||||| | |||||||| | | ||| || | Sbjct 19158 CAGAGTTGCATTGTCATCGCTTCGCGAAATTCAAGCGCGGTCATAAAATTATTTGGACGG 19217 Query 16245 TAGCGCAGCAATCGCGCCAGCGGATTGCTCAAACCCACTTTTTTGCGATTGTCATTCTGG 16304 | ||||| | |||||||| ||||| || ||||| | || | |||||| Sbjct 19218 AATCGCAGGAGGCGCGCCAGGGGATTTTCGTTTCCGACTTTCTGACGTTGGTCATT---A 19274 Query 16305 TCGGTTTCGAAGACATCAAGCGGTAAGCATGCCGTGAGCGTTGAAATCAGGCTCACGCAG 16364 | ||||| || ||||| ||||| | |||| || | ||||| ||||| || | ||| Sbjct 19275 ACAGTTTCAAACACATCTAGCGGGAGAGATGCTGTCACGGTTGATATCAGTCTTATGCAA 19334 Query 16365 CGCCAAACCGTCGAAATTTGCAGTAACCGTTCATCGTTAA 16404 |||||| || || |||| ||||||||| ||| Sbjct 19335 GACCAAACGGTGCTGATCTGCATATTACGTTCATCGGTAA 19374 Score = 122 bits (134), Expect = 2e-23 Identities = 338/512 (66%), Gaps = 21/512 (4%) Strand=Plus/Plus Query 22308 AGAACCATGCTGCAGATCGCGCTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCA 22367 ||||||| | ||||| ||| ||| | |||| | ||||||| || || | Sbjct 23738 AGAACCAGCCGGCAGAACGCATCGCGTTACCGTCGCTCTCCAGCAGTTGAGGATTGCCAA 23797 Query 22368 CAAGGTCAAGTTTCAGCGCGGCGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGA 22427 | ||||| ||||||||||| ||||| | ||||| || || | ||||| | ||| | Sbjct 23798 CCAGGTCGAGTTTCAGCGCAATACCGCACGCTCGGTAGTTGTCCTGGCCGGTAACCTGAA 23857 Query 22428 TGAGCCCGCGTCCGCGATATTTCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGC 22487 | ||||| || || |||||||||||||||||||| | | ||||| || ||||| | | Sbjct 23858 TCAGCCCACGCCCACGATATTTCCAGCCATCACCGCGTGATTTATTGCCCAGGCGATCGG 23917 Query 22488 TGTAAACCAGATTGGCGATCGCGCGCTGGCGTTCAAGGGGCAGCACCTTTTCATACGTGC 22547 ||| ||||| || || ||||| ||||| | | ||| | || | || ||||| Sbjct 23918 CGTATACCAGGTTTGCAATCGCCGGCTGGTTTGCCAGGTG-TGC-CGTT---GTACGT-- 23970 Query 22548 GGCGGCCCAGCGTGTTGGCCTGATCCTGAGTTAACCGGCCAGCCC---GGACAAAATCAT 22604 || ||| || ||||||| |||| | || | ||| || ||| | Sbjct 23971 -----CCAAGCATGCCAGCCTGATAGGGAGTGATGCG--CTTCCCAAAGGTTGAAAGC-- 24021 Query 22605 TAAGCGCTGCGATGCTGTAGTTGAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCAT 22664 || | ||| | | ||||||| | ||||||| || | ||||||||| | ||||| Sbjct 24022 -AATCCCTGTGGCG-TGTAGTTCAGGCTCTCTACCGTGCGGGTAAAGCCAGCTGATTCAT 24079 Query 22665 GGCCGACCTGCGCGATGAACATTGCCTGGTCGACCGGCGCAGTGATGCCGTAATCACGCA 22724 | || ||||| || || ||||||||||| | | ||| ||| | | ||| | Sbjct 24080 GCCCAACCTGAGCAATAAACATTGCCTGTGCCGCTGGCTTCTCGATTGAGAACTCAGCAA 24139 Query 22725 TCGCCGCATCAATGTGCGGGAACCAGCGCGCAGTTAAGCCGGCGCTTAAACCAGCCGCCT 22784 | || | || || |||||||||||| ||| |||||||| | |||||||||| Sbjct 24140 AGGTGGCGAGCAGATGAGGATACCAGCGCGCAGCTAACCCGGCGCTGATACCAGCCGCCC 24199 Query 22785 CCTGAAATTGTTGTTGGTTCATTCGGGCCTCA 22816 ||||||| | ||| ||||| ||||||| Sbjct 24200 ATTGAAATTCGTTTTGTGTCATTGTGGCCTCA 24231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124714762127488