Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=46747018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || || || || ||||| || || || || || ||| ||| Sbjct 38965156 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 38965097 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || |||||| ||||| ||||| | || || || Sbjct 38965096 GACACCATTGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 38965037 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || |||||||||||| | || |||||||||| ||| Sbjct 38965036 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38964977 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || ||||| || ||| |||| Sbjct 38964976 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38964948 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || || || || ||||| || || || || || ||| || Sbjct 38965384 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 38965325 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || |||| || ||| ||||||||||| | || ||| || Sbjct 38965324 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 38965265 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || |||||||||||| | || |||||||||| ||| Sbjct 38965264 CAGAGGTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38965205 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || ||||| || ||| |||| Sbjct 38965204 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38965176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || |||||| | || || || ||||| || |||||||| ||||| || ||||| Sbjct 20151772 GATAAGGAGGGAATCCCACCGGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGTTGGAG 20151713 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || || || |||||||| ||||||||||| || ||| |||| ||| Sbjct 20151712 GATGGAAGGACTCTAGCTGACTACAACATTCAGAAAGAATCTACGCTTCACCTGGTCTTA 20151653 Query 28767 AGATTACGAGGAGGGAT 28783 | |||| ||||| || Sbjct 20151652 CGTCTACGTGGAGGTAT 20151636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || |||||| | || || || ||||| || |||||||| ||||| || ||||| Sbjct 20187905 GATAAGGAGGGAATCCCACCGGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGTTGGAG 20187846 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || || || |||||||| ||||||||||| || ||| |||| ||| Sbjct 20187845 GATGGAAGGACTCTAGCTGACTACAACATTCAGAAAGAATCTACGCTTCACCTGGTCTTA 20187786 Query 28767 AGATTACGAGGAGGGAT 28783 | |||| ||||| || Sbjct 20187785 CGTCTACGTGGAGGTAT 20187769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425397665961504