Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq82 226 3e-54 >seq82 Length=657493 Score = 226 bits (250), Expect = 3e-54 Identities = 356/507 (70%), Gaps = 7/507 (1%) Strand=Plus/Minus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 ||||||||| || ||||| | |||| | ||| ||||||| ||||||||| | || || Sbjct 461264 TTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGT 461205 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 40542 | |||||||| || || || | ||||| ||||||||| | |||| ||| | Sbjct 461204 TAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGA 461145 Query 40543 TTCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGG 40602 |||| |||||||| || | | || || || ||| |||| ||||| || || ||||| Sbjct 461144 TTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGG 461085 Query 40603 GGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCA 40662 |||| || ||| | ||||| ||| | ||| | || | ||| ||||| |||| Sbjct 461084 TATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA 461025 Query 40663 TACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGG 40722 ||||||| |||||||| | |||||| |||||| ||||| ||||||||||| || || Sbjct 461024 TACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGG 460965 Query 40723 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 40782 || ||| | ||||| || ||||| | | |||||| | |||||| | ||| |||||| Sbjct 460964 AGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAG 460905 Query 40783 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 40842 | | || || || || || | ||| | |||||||| | || ||||| ||||||| Sbjct 460904 TTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTA 460845 Query 40843 TGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTAATGAATC--GTGATTACATTACG 40900 || ||||| |||| | ||||||||| || | ||| | ||| | | | ||||| Sbjct 460844 TGCAGTACAAATTAATAAATTGATGTATCAAAGATTATT--ATCAGGAAAAAAAATTACA 460787 Query 40901 CTGTTTAGTCCG---GATGTTGCTAAC 40924 | ||||| ||| |||||| ||||| Sbjct 460786 TTATTTAGCCCGTCTGATGTTCCTAAC 460760 Score = 107 bits (118), Expect = 2e-18 Identities = 225/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 42177 AACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGAAACACAAAG 42236 |||||||||||||||| || | | |||| || ||||| ||| ||| | || Sbjct 459457 AACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATA 459398 Query 42237 TTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42296 |||| |||| | | ||||||| || ||||| || ||| | || |||||| | |||| Sbjct 459397 TTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATC 459338 Query 42297 TGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAACATGAAAAAATCATTTTCGAT 42355 | ||| || | || | | | ||||| || ||||||||||||||| ||||| | Sbjct 459337 TCTCTCGAGATAGAATAGATTTT-CAAAATTTACCTGAACATGAAAAACATATTTTTCTT 459279 Query 42356 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 42415 ||| || | |||||||| | ||||| | ||||| ||| | | |||||| | || Sbjct 459278 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 459219 Query 42416 TTTTTGCCAATTGCATCCGATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGT 42475 ||| | |||||| || | | | ||||||||||| ||||| ||| | ||| Sbjct 459218 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 459159 Query 42476 GAAACCATCCACAGCCGTAGTTACACGCATATT 42508 ||||| || ||| ||| ||| || |||||| Sbjct 459158 GAAACTATTCACTCACGTTCTTATACTCATATT 459126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557984002510080