Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq82 188 7e-43 >seq82 Length=657493 Score = 188 bits (208), Expect = 7e-43 Identities = 310/447 (69%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 |||||| | ||| ||||| | | ||||| | ||||| | | ||||| || | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 | || || ||||| || || | |||||| |||| |||||| ||||||||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 ||| || || ||||| | || || ||||||||||| |||||||| ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | |||||||| |||||||| | |||||||||| | ||| ||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 134082 || ||||| | || || || || || || || ||||| | | ||| || | ||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 134083 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 134142 | || | | || |||||||||| || ||| || |||||| | ||||| || Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 134143 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 134202 ||||| || ||||||||||| | | | || | |||||| ||||| || || ||||| | Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 134203 GCGAGTAGATACAGCATCATAAAAACG 134229 | ||| || | |||| ||||||||| Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512570383637760