Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq82 156 4e-33 >seq82 Length=657493 Score = 156 bits (172), Expect = 4e-33 Identities = 915/1452 (63%), Gaps = 64/1452 (4%) Strand=Plus/Minus Query 119742 ATATTTGAAACACCACAATTCATGTATATGTT--AATCTCTGCTACATTATTCAGAAATT 119799 |||| ||||| | ||||| | |||||||| ||| ||||| ||||| || | Sbjct 461356 ATATATGAAAGCGCCCAATT--TTTATATGTTCTAATATCTGCGTGCTTATTTTCTAAAT 461299 Query 119800 ACTCAAAAGAAAAAAGGATGAGTTATGTTAAAAAATATTATAACGCAATATCAACCCACC 119859 | | ||| | | || |||| ||| ||| | | |||||| || || ||||| Sbjct 461298 ATCCCAAAAATATTAGAATGAATTACGTTCAGCGTTTTTATAATGCCATTTCAAC----- 461244 Query 119860 TTATCAACATTCCT------ACTCCGGTCATGGCAGGTGTTAGGACTCCTATTCGCCAGT 119913 | |||| ||| || || || | ||| | || ||||| ||||||| ||| || | Sbjct 461243 -TTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAAT 461185 Query 119914 AT-GCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTACCTAGTATCTTCTCTAGCGAT 119972 | ||| | |||| | | || |||||||| | || | ||| | ||| | Sbjct 461184 TTAGCTCAT-GTGTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACT 461126 Query 119973 ATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGGTATCAATGCTGGCAGAATT 120032 | |||||| ||||||| ||||| | || || |||||||| |||||||| | |||| Sbjct 461125 AGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATT 461066 Query 120033 AGGGGAATTAATAGTCGTATCCG---TGGCGGAGAAGTTCAACATACCGGCGTTGTCCCA 120089 | | | | ||||| ||| | ||||| || | |||| ||| || | | || Sbjct 461065 CGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA---TACTGGTTGTATTCCT 461009 Query 120090 TTTCTTAAAAAGTTTGAGGCAACGGTCAAGTGTTGTACACAAAACGGTGTTAGAGGCGGT 120149 ||| |||| | ||| | | || || | ||| | ||| || |||||||| || Sbjct 461008 TTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGA 460949 Query 120150 TCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAGATATACTTGTTTTAAAA 120209 | |||||| || | ||| || ||||| ||||| ||| | || | ||||||||| Sbjct 460948 GCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAA 460889 Query 120210 AACAATAAAGGTACGGAAGATAATAGAGTTAGAAAATTAGATTACTCTATACAATTATCA 120269 || |||| || | ||||| |||||||| | | | ||||| | ||||| | Sbjct 460888 AATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAAT 460829 Query 120270 AAATTATTTTACGAAAGATT--TATTAAGAATGAAGATATAACTTTATTCTCTCCACATG 120327 ||||| | || ||||||| ||| | ||| || | || || ||||| || || Sbjct 460828 AAATTGATGTATCAAAGATTATTATCAGGAA--AAAAAATTACATTATTTAGCCCGTCTG 460771 Query 120328 ATGTGCCAGGTTTATATGACGCATTTGGTA------AGGAAGAGTTTGACGAATTGTATG 120381 |||| || |||||| | ||| | | ||| | ||||| ||| ||| Sbjct 460770 ATGTTCCTAACTTATATAAATATTTTTTTTCTAATCAAGAAAAATTTGAAGAAAAATATA 460711 Query 120382 CTTCGTATGAAAGAAAAACATCTATAAAGAAAAAGAAAGTCAACGCACAAGATTTGTTTA 120441 | ||||||| ||| | | |||| |||||| | | || ||| |||||| ||| Sbjct 460710 TTCAATATGAAAAAAATAAAAATATACGGAAAAAAAGTATAAAAGCATTAGATTTATTTT 460651 Query 120442 TGTCAATCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTATATTATGAACATTGACCATG 120501 || |||| | |||||||| || ||||| ||||| ||||| || | || ||| Sbjct 460650 CGTTAATCATGCAAGAAAGAACATCTACAGGACGTATTTATATACAAAATGTAGATCATT 460591 Query 120502 TTAATACTCATTCATCTTTTAAAGATAAAGTA-----AACATG----TCTAATCTATGCC 120552 |||| | ||| | ||||| |||| || || | | |||||| ||||| Sbjct 460590 GTAATTCACATAGTGCATTTAATCCTAAATTATCTCCAATAAGACAATCTAATTTATGCT 460531 Query 120553 AAGAGATTACATTACCAACAGAACCTATTAGTCACATTGACGGTGAA---GGTGAGATTG 120609 ||| ||||| ||||| || || || | | | | ||||| | | || || || |||| Sbjct 460530 TAGAAATTACTTTACCCACTAAATCTTTAAATAATATTGATGATAAAAAAGGAGAAATTG 460471 Query 120610 CATTGTGTATTCTATCTGCTATCAATATGGGTGCAATTAATGATAAAGAAGAATTAGAAA 120669 || | |||| |||||||| | ||| | || | |||||| || | ||| || || Sbjct 460470 CACTTTGTACATTATCTGCTTTTAATTTAGGAACTATTAATAATCTAACAGATTTTAAAG 460411 Query 120670 ACCTTTGTGATTTATCTGTAAGAGGACTAGAAGAAATAATTGACCATCAAAATTATCCTG 120729 | | | || ||||| || | | ||| || |||||| | || ||||||||||||| Sbjct 460410 AATTATCTGTATTATCAGTTCGTGCACTTGATGAAATATTAGAATATCAAAATTATCCAA 460351 Query 120730 TTATAGCGGCAGAAAAAAGTACAAAAGCAAGGCGTTCACTAGGTATTGGTTATATTGGTC 120789 | |||| || || || | | | || ||||| | ||||||||| || | Sbjct 460350 TATTAGCAGCTAAAGAATCAGCTATTTCTAGACGTTCTTTGGGTATTGGTGTAATCAATT 460291 Query 120790 TTGCTCATTTCTTAGCAAAGAACAAGGTTTCTTACGC--CTCA-AAAGAAGCCTGGAAGT 120846 |||| ||| | |||| || || || | ||||| ||| | | || || || Sbjct 460290 TTGCATATTACCTAGCTAAAAATAA-----CGTACGCTATTCAGATGGTAG--TGCAAAA 460238 Query 120847 TGGTGGAC-----GAGTTTACTGAGGCATTTCAATACTATCTACTCAAAGCTTCCAATGA 120901 | || || || ||| || | ||||| ||| || | |||| || ||| Sbjct 460237 AACTTAACACATAGAACTT-TTGAAGCCATGCAATATTATTTATTACAAGCCTCTTGTGA 460179 Query 120902 GATTGCAAAAGAAAAAGGACCATGTGAATACTTTAGTAGAACAAAATACTCAGATGGTAT 120961 | ||||||||||||||| ||||| | |||| | || || || | |||| Sbjct 460178 TTTAGCAAAAGAAAAAGGAGCATGTTCTTTATTTAATCACACTAATTATTATTTAGGTAA 460119 Query 120962 ATTACCAATTGACACTTATAAAAAAGATGTTGATAATATAGTTAAAAGAA-AACTATCTT 121020 |||||| || || || || |||||||| ||||||| ||| | | ||| | | || Sbjct 460118 ATTACCTATAGATACATACAAAAAAGACATTGATAAAATA-TGCGATGAACCATTGCATT 460060 Query 121021 ACAATTGGGAAAAGTTAAGAAAAGAAATACAAGAACATGGTTTAAGACATAGTACATTGT 121080 ||||| | | || | |||| || ||||||| |||||| | ||||| | Sbjct 460059 TAGATTGGAATATATTGCGTTCTAAAATTAAAAAACATGGATTAAGAAACTCAACATTAT 460000 Query 121081 CAGCACAAATGCCAAGTGAAAGTTCAAGTGTTGTATCAAATGAAACAAATGGTATTGAAC 121140 | |||| ||||| |||| || | |||| |||| ||| ||||| ||||||| Sbjct 459999 CTGCACTTATGCCTTCAGAAACATCCTCTCAAATATCTAATGCAACTAATGGAATTGAAC 459940 Query 121141 CACCAAGAGATT 121152 ||||||||| || Sbjct 459939 CACCAAGAGGTT 459928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471172695690240