Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq8 104 1e-17
seq12 82.4 4e-11
>seq8
Length=24646021
Score = 104 bits (114), Expect = 1e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
|||| ||||| |||||||| ||||| || ||||| | ||||| ||||||||||| ||
Sbjct 14311535 TACCCTTTCTCTTTCCTCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCA 14311476
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
|||||||| | ||| | || ||| ||||||| | |||| | |||||||| |
Sbjct 14311475 GCATTGGAAGAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCAC 14311416
Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243
|| | |||| | || ||| || || ||||| |||| ||| ||||||| ||
Sbjct 14311415 GGATGTTGTGAACTGAAACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCT 14311356
Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| |||||| ||||||| | |||||||| | |||||
Sbjct 14311355 TCAATGTATCATAAATTCCCTCAATGCTATCGTCCTTCAT 14311316
>seq12
Length=46391361
Score = 82.4 bits (90), Expect = 4e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
|||| ||||| || ||||| ||||| || ||||| | || || ||||||||||| ||
Sbjct 30921101 TACCCTTTCTCTTGCCTCCTCCTTGGTCAACGTAGCGAGCGGTATCATTGAAAACACGCA 30921042
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
|||||||| | ||| | || ||| ||||||| | |||| | ||| || | |
Sbjct 30921041 GCATTGGAAGAATACCATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCAC 30920982
Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243
|| | |||| | || |||||| || ||||| |||| ||| | || || |||
Sbjct 30920981 GGATGTTGTGAACTGAAACACCGATACCCCCAGCTGATTTACTTATAACAGCGCACTCTT 30920922
Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| ||||| | ||||| | ||||||||| | |||||
Sbjct 30920921 TCAAGGTATCATATATTCCCTCGATGCTATCATCCTTCAT 30920882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253035756519200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |