Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_020873.1 Length=158621 Score E Sequences producing significant alignments: (Bits) Value seq341 170 2e-37 >seq341 Length=107858 Score = 170 bits (188), Expect = 2e-37 Identities = 316/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Plus Query 5714 TACACGGAGGGCACAATGGCATCGTCCAGGGAGCTAACTACGGAAATCGTAAAGAGCACA 5773 |||| || || || | || | || || |||||||||| |||||||| ||||| || | Sbjct 46834 TACATGGTGGTCATACTGAGTTTGTACAAGGAGCTAACTGGGGAAATCGAAAAGAACATA 46893 Query 5774 TCATGGACCGCCAAGTAAAAGACGCTCTAATCAGCAAGCTTCGTAG-TCTAGGACATACA 5832 | ||||| || | || || || || | |||| | || || | |||| ||||| Sbjct 46894 TTATGGATCGTCTTGTTAAGGATGCGGTTG-CAGCTAAGTTAAGAGCTTTAGGTCATACG 46952 Query 5833 GTATACGATTGCACAGATGAAACAGGCTCTACACAGTCTGCTAACCTACGTAACATCGTA 5892 || || ||| |||||||||| ||| ||||| | ||| || || ||||| Sbjct 46953 GTTTATGATGACACAGATGAAGTAGGAAGAACACAAGCACAAAACTTATCAAATATCGTT 47012 Query 5893 GCTAAATGTAACGCTCACCGAGTAGACTTAGACATCTCGTTACACTTAAACGCATTCAAC 5952 ||||||||| |||| || || |||| ||||| || || || || |||| | Sbjct 47013 CGTAAATGTAATTCTCATGATGTTGATTTAGTTATCTCATTCCATTTGAATGCATATGAT 47072 Query 5953 GGTTCTGCTAACGGGGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTT 6012 || ||||| || || || ||||| || || ||||||||||| ||||||| ||||| Sbjct 47073 GGGAAAGCTAATGGCGTGGAAGTTTGTTATTATGACCAACAAGCATTAGCTGCAAAAGTA 47132 Query 6013 TCTAAACAACTGTCTGATGACATTGGCTGGTCTAACCGTGGAGCTAAAGTACGTACAGAC 6072 || ||||| || | || || || ||||| || |||||||| ||| ||||| || Sbjct 47133 TCAGCGCAACTTTCAAAAGATATCGGTTGGTCAAATCGTGGAGCGAAAAAGCGTACTGAT 47192 Query 6073 CTTTACGTGTTAAACACTACTAGCGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 6132 || || ||| | | || | ||||| || |||||||||||| | ||||||||||| Sbjct 47193 CTCTATGTGCTGACTGAAACCAAAGCACCAGCAATCTTAATCGAACTTGGATTCATCGAT 47252 Query 6133 AACGAGAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 6173 || || || ||| | |||||| | |||||||| || || Sbjct 47253 AATGATGCGGATATGTCGAAGTGGCATGTAGATAATATTGC 47293 Score = 170 bits (188), Expect = 2e-37 Identities = 316/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Plus Query 5714 TACACGGAGGGCACAATGGCATCGTCCAGGGAGCTAACTACGGAAATCGTAAAGAGCACA 5773 |||| || || || | || | || || |||||||||| |||||||| ||||| || | Sbjct 97246 TACATGGTGGTCATACTGAGTTTGTACAAGGAGCTAACTGGGGAAATCGAAAAGAACATA 97305 Query 5774 TCATGGACCGCCAAGTAAAAGACGCTCTAATCAGCAAGCTTCGTAG-TCTAGGACATACA 5832 | ||||| || | || || || || | |||| | || || | |||| ||||| Sbjct 97306 TTATGGATCGTCTTGTTAAGGATGCGGTTG-CAGCTAAGTTAAGAGCTTTAGGTCATACG 97364 Query 5833 GTATACGATTGCACAGATGAAACAGGCTCTACACAGTCTGCTAACCTACGTAACATCGTA 5892 || || ||| |||||||||| ||| ||||| | ||| || || ||||| Sbjct 97365 GTTTATGATGACACAGATGAAGTAGGAAGAACACAAGCACAAAACTTATCAAATATCGTT 97424 Query 5893 GCTAAATGTAACGCTCACCGAGTAGACTTAGACATCTCGTTACACTTAAACGCATTCAAC 5952 ||||||||| |||| || || |||| ||||| || || || || |||| | Sbjct 97425 CGTAAATGTAATTCTCATGATGTTGATTTAGTTATCTCATTCCATTTGAATGCATATGAT 97484 Query 5953 GGTTCTGCTAACGGGGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTT 6012 || ||||| || || || ||||| || || ||||||||||| ||||||| ||||| Sbjct 97485 GGGAAAGCTAATGGCGTGGAAGTTTGTTATTATGACCAACAAGCATTAGCTGCAAAAGTA 97544 Query 6013 TCTAAACAACTGTCTGATGACATTGGCTGGTCTAACCGTGGAGCTAAAGTACGTACAGAC 6072 || ||||| || | || || || ||||| || |||||||| ||| ||||| || Sbjct 97545 TCAGCGCAACTTTCAAAAGATATCGGTTGGTCAAATCGTGGAGCGAAAAAGCGTACTGAT 97604 Query 6073 CTTTACGTGTTAAACACTACTAGCGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 6132 || || ||| | | || | ||||| || |||||||||||| | ||||||||||| Sbjct 97605 CTCTATGTGCTGACTGAAACCAAAGCACCAGCAATCTTAATCGAACTTGGATTCATCGAT 97664 Query 6133 AACGAGAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 6173 || || || ||| | |||||| | |||||||| || || Sbjct 97665 AATGATGCGGATATGTCGAAGTGGCATGTAGATAATATTGC 97705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507450471701760