Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq82 223 2e-53 >seq82 Length=657493 Score = 223 bits (246), Expect = 2e-53 Identities = 608/929 (65%), Gaps = 59/929 (6%) Strand=Plus/Minus Query 10935 AAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCC 10994 ||| |||||| | ||||| ||||| || ||||| || || ||| | || || | ||| Sbjct 459481 AAAAAAAAAATAATCAACTAAAGGAACCTATGTTTTTTGGACAACCTGTCAATATTGCCC 459422 Query 10995 GTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCT 11054 | || || || || ||| || || ||||||| ||| ||| | | || ||||| || || | Sbjct 459421 GATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTT 459362 Query 11055 TCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGAC- 11112 | ||| | || |||||| | ||| | || | ||| |||| || | || ||| | || Sbjct 459361 TTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCA--AAATTTACC 459304 Query 11113 TGATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGAT 11172 ||| || ||||| || || ||||||| | || || ||||||||| | ||||| || Sbjct 459303 TGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACTCTAT 459244 Query 11173 CCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAAC 11232 ||||| | || || || || || || || || ||| | || | || ||| | ||||| Sbjct 459243 TCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAGAAAC 459184 Query 11233 TTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCAT 11292 ||| | ||||| ||| || ||||| || ||||| ||||| || || || || || Sbjct 459183 CTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATATTAT 459124 Query 11293 TCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACAT 11352 | | |||||||| ||| || | | | || |||||| || || ||||| || || Sbjct 459123 TAGAAATATTGTTAATTCTCCATCTTTAATATTTGATGATATTATTTCCAATAAACATAT 459064 Query 11353 CCTAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATC-------------- 11398 || ||||||||| ||||| ||||| ||||| | || Sbjct 459063 TAACGATCGAGCTAAAAATATTTGCATATACTATGACGAATTAATAAAAATTACTAGTTA 459004 Query 11399 TTGGCATGCA-------AAGAG---CATGAGCTAAACGGCAAACACA----CAATGCGCG 11444 ||||||| | ||| ||| | |||| || ||| | | || | | Sbjct 459003 TTGGCATTTATTCGGTGAAGGTATACATTTGGTAAAAGGAAAAAATATTAACATTACTTT 458944 Query 11445 AC-----CTAAAGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGT 11499 | || || ||||| || ||| | ||| | || ||||||||||||||||||| | Sbjct 458943 AAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATAAGTGTTAATGTATTAGAAGCAAT 458884 Query 11500 TCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGG 11559 | | || || |||||||| || |||||||| || || || ||| | || | |||||||| Sbjct 458883 TAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGCAGAAAGAGAATTAATGGAAGG 458824 Query 11560 TAATGCTAAAATCATCAAGCTT-ATTGCTCGTGATGAAGCACTACACCAAAGCGGTACAC 11618 |||||| ||||| || ||| || || || | ||||||||| | || | | || |||| Sbjct 458823 TAATGCAAAAATTAT-AAGATTAATAGCAAGAGATGAAGCATTGCATCTTACAGGAACAC 458765 Query 11619 AGCACATGCTGA----------AGATGTGGAACAACGGCACCGATGATATGGAAATGGCT 11668 | || || ||| ||||||| || | || || || ||| | | Sbjct 458764 AACATATTTTGAATCTTTTAAGAGATGTGAAAAA----CAATGAAGAAATGTATCAAACA 458709 Query 11669 TCTATCGCACATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAA 11728 ||||| || ||| ||||| | || | ||||||| | || | ||||||| Sbjct 458708 TCTAT------AGAATGTAAAGAAGAAGCCATGAATATATTCATACTAGCAGCAGAACAA 458655 Query 11729 GAGAAAGACTGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGAT 11788 || ||| | ||||| || ||| |||| ||||||| ||| | ||||| || |||||| Sbjct 458654 GAAAAAAAGTGGGCTAAATATTTATTTCAAGATGGATCAATGCTTGGACTCAATAAAGAT 458595 Query 11789 ATTCTATGTGAATATGTTGAGTACATCAC 11817 || || ||| ||||| | || || || || Sbjct 458594 ATACTTTGTCAATATATCGAATATATTAC 458566 Score = 167 bits (184), Expect = 2e-36 Identities = 290/422 (69%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 9243 AAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCT 9302 |||| || | ||||||||||| |||||||| ||| | || || || || ||||| |||| Sbjct 461238 AAATTTCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCT 461179 Query 9303 CATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAA 9362 |||| || ||| ||| | | ||||| ||| | || || || || || | | | | Sbjct 461178 CATGTGTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTA 461119 Query 9363 TCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCAT 9422 | || | || ||||| || || ||||| ||||| ||||| || || || || ||| Sbjct 461118 TTGTAAAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAG 461059 Query 9423 TAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAAC 9482 ||||| | ||| | ||| ||||| | |||||||||||||| || || || |||| Sbjct 461058 TAGGTAGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAAC 460999 Query 9483 ACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGG 9542 | || |||| || || |||| ||| ||||| || ||| | || || |||||||| Sbjct 460998 ATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTA 460939 Query 9543 TATTCTACCCAATGTGGCACCTAGAGTACAAATCACTAATCGTACTCAAGAACAACCGTG 9602 |||| || ||||| ||||| | || || || | || | || || || | | Sbjct 460938 TATTTTATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGG 460879 Query 9603 GTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAATGGCCTGATGT 9662 | || |||||||| | |||||||| | || || | |||||||||||| |||||| Sbjct 460878 GCATTGAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGT 460819 Query 9663 AT 9664 || Sbjct 460818 AT 460817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342967048346144