Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 seq9 91.5 3e-13 seq362 86.0 1e-11 seq10 86.0 1e-11 seq3 86.0 1e-11 >seq1 Length=46747018 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | | || |||| || | |||| ||| || ||| || Sbjct 38965149 ATTTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTG 38965208 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || || ||| || ||||| ||||| ||||| || || ||||| || Sbjct 38965209 TAATCGGCCAAGGTCCTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAACCTCTGCTGG 38965268 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||| ||||| || |||| ||| | ||| |||||| ||||| Sbjct 38965269 TCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGGAG 38965328 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || | ||| || || || || || | ||| || || ||||||||||| Sbjct 38965329 CTTTCAACCTCCAAAGTGATCGTCTTTCCCGTCAACGTCTTAACGAATATTTGCAT 38965384 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || || |||| || || || ||| || ||||| ||||| Sbjct 38964960 GTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCCAATTGCTTTCCA 38965019 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| || | ||||| || || ||||| || || || || || || ||||||| ||| Sbjct 38965020 GCAAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATTTTGGCTTTC 38965079 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | ||| ||| || |||||| ||| || ||||| || || || || || || | ||| Sbjct 38965080 ACATTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTTCCCGTCAACGTC 38965139 Query 193344 TTTACAAATATTTGCAT 193360 || || ||||||||||| Sbjct 38965140 TTAACGAATATTTGCAT 38965156 >seq9 Length=46179939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || | |||| || | ||||| ||| || || || ||||| Sbjct 43442084 ATACCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCC 43442143 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || ||||| || || | ||| ||||||||||| || || ||||| || || ||| Sbjct 43442144 GCCAATGTTCTGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGA 43442203 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | || ||| || || ||| ||| Sbjct 43442204 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAACTCTCC 43442263 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || || || || || || || ||||| || ||||| Sbjct 43442264 ACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 43442313 Score = 89.7 bits (98), Expect = 9e-13 Identities = 178/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | | || || |||||||| || | ||| || ||| || Sbjct 43442534 ATTTGCATACCACCACGGAGCCTGAGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTG 43442593 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | ||| || | || |||||||| || || |||||||| ||| Sbjct 43442594 TAGTCAGCGAGGGTACGCCCATCTTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGA 43442653 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||||||||| || || |||| ||| | || || ||||| || Sbjct 43442654 TCCGGAGGAATACCTTCTTTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAG 43442713 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||| || || | || || || || || || || || || || || || ||||| | Sbjct 43442714 CTCTCCACCTCCAACGTGATCGTCTTCCCGGTCAGTGTCTTGACGAAGATCTGCATCT-- 43442771 Query 193365 TTAGTAAAATAATTATTTTAAAT 193387 ||||| | || || | ||||| Sbjct 43442772 GTAGTAGATCAAGTAATCTAAAT 43442794 >seq362 Length=95773 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| || ||||| | |||| ||| || || || ||||| Sbjct 38610 ATACCACCTCTTAGACGAAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCA 38551 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | || |||| || || |||||||| || | |||||| || || ||| Sbjct 38550 GCGAGTGTGCGTCCGTCTTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGGTCTGGA 38491 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| || || || || |||| Sbjct 38490 GGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTATCGATCGTGTCAGAGCTCTCA 38431 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || || || ||||| || ||||| Sbjct 38430 ACCTCCAGTGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 38381 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || ||||| | || | ||| || || || || || Sbjct 38838 ATACCACCTCTCAGACGAAGCACAAGATGGAGCGTGGACTCCTTTTGGATGTTGTAATCC 38779 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | || || || || || || | |||||| || || ||| Sbjct 38778 GCGAGAGTGCGACCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGA 38719 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | ||| | || || || || || |||| Sbjct 38718 GGGATCCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCGATCGTGTCTGAGCTCTCA 38659 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | |||||| ||||| || || || || || ||||| || ||||| Sbjct 38658 ACCTCCAAAGTTATTGTTTTGCCGGTGAGGGTCTTAACAAAAATCTGCAT 38609 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||||| || | ||| || ||| || || || | | ||| | | | Sbjct 39279 CGCAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCAAGCGTGCGACCA 39220 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || || || || | ||||||||| || ||||| || ||||| || Sbjct 39219 TCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTG 39160 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| || || || || |||||||| | || ||| Sbjct 39159 TCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAATA 39100 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| | || || ||||||||||||||| Sbjct 39099 GTCTTGCCTGTCAAAGTCTTGACAAATATTTGCATT 39064 >seq10 Length=21498587 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| || ||||| | |||| ||| || || || ||||| Sbjct 20066883 ATACCACCTCTTAGACGAAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCA 20066942 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | || |||| || || |||||||| || | |||||| || || ||| Sbjct 20066943 GCGAGTGTGCGTCCGTCTTCTAGCTGCTTCCCGGCAAAGATAAGTCTCTGCTGGTCTGGA 20067002 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| || || || || |||| Sbjct 20067003 GGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTATCGATCGTGTCAGAGCTCTCA 20067062 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || || || ||||| || ||||| Sbjct 20067063 ACCTCCAGTGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 20067112 >seq3 Length=51870232 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| |||||| || || | || || | | ||| || || || ||||||||||| Sbjct 22921182 CTCTTTCTGAATATTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAA 22921241 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || | ||||| || || || || ||||| || ||||| || || |||| || | ||| Sbjct 22921242 GATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATT 22921301 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 |||||| || || ||| || || | ||| ||||| || || || | || || || Sbjct 22921302 GTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGAC 22921361 Query 193349 AAATATTTGCAT 193360 ||| || ||||| Sbjct 22921362 AAAGATCTGCAT 22921373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899638925944320