Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14 123 4e-23 seq9 102 1e-16 seq150 98.7 1e-15 seq1 98.7 1e-15 seq10 95.1 2e-14 seq362 89.7 8e-13 seq6 86.0 9e-12 seq8 84.2 3e-11 >seq14 Length=60807478 Score = 123 bits (136), Expect = 4e-23 Identities = 158/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA-TTC 155881 ||||| || ||| | || || ||||||||||||||||||||||| || || | ||| || Sbjct 28597319 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28597260 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||||| ||| || || ||||| || || || || ||||| || || Sbjct 28597259 CGATACTATTGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 28597200 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | ||||| |||||||| ||||| |||||| || | || || || Sbjct 28597199 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 28597140 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || ||||| || ||||| Sbjct 28597139 CAT-TCAAAAGGAGTCTACACTTCACTTGGTGTT 28597107 >seq9 Length=46179939 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| ||||| || ||||| |||||||| || || || || ||| Sbjct 43442541 ATGCAAATCTTCGTTAAGACATTAACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCA 43442482 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || ||||| || || || || ||||| || || Sbjct 43442481 GATACTATTGACAATGTCAAAGCCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAG 43442422 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 43442421 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 43442386 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || || || ||||| |||| || || ||| Sbjct 43442085 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATTACTCTAGAGGTGGAGAGTTCC 43442026 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 43442025 GACACCATTGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGACCAG 43441966 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 43441965 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTAGCTGACTACAAC 43441906 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| |||| ||||| || ||| || Sbjct 43441905 ATCCAGAAAGAGTCGACCCTTCACTTGGTGCTA 43441873 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || || ||||| |||| || || ||| Sbjct 17422150 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACCATTACTCTAGAGGTGGAGAGTTCC 17422091 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| ||||| || || Sbjct 17422090 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 17422031 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| ||| | || || | || || || Sbjct 17422030 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCTGACTACAAC 17421971 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| |||||||| ||||| Sbjct 17421970 ATTCAGAAGGAGTCGACTCTTCATTTGGTGTT 17421939 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| |||| || || || || || || || || || ||| Sbjct 43442769 ATGCAGATCTTCGTCAAGACACTGACCGGGAAGACGATCACGTTGGAGGTGGAGAGCTCT 43442710 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || ||||||||||| || ||||| || || Sbjct 43442709 GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCGGATCAG 43442650 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| | ||||| |||||||| |||||| Sbjct 43442649 CAGAGATTGATCTTCGCCGGAAAGCAGCTTGAAGAT 43442614 >seq150 Length=379418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | || || || || || || ||||| || || ||| Sbjct 106170 ATGCAGATTTTCGTGAAGACACTTACGGGCAAGACCATCACGTTAGAGGTGGAGAGCTCT 106229 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || || || |||||||| |||||||| || Sbjct 106230 GACACCATTGATAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 106289 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| ||||||||||| ||| | || ||| | || || || Sbjct 106290 CAGAGATTGATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACCTTAGCTGACTACAAC 106349 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| ||| |||| ||||| || || |||| Sbjct 106350 AT-TCAAAAGGAGTCGACCCTTCACTTGGTCCTAAG 106384 >seq1 Length=46747018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| || ||||| ||||| || || || || || || ||| || Sbjct 38965384 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 38965325 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| ||||| || || || ||||| || Sbjct 38965324 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 38965265 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| | |||||| ||| || || | ||||| || Sbjct 38965264 CAGAGGTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38965205 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | |||||||| || || Sbjct 38965204 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38965176 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| || ||||| ||||| || || || |||| || || ||| Sbjct 38965156 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 38965097 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||||| || || || || || || ||||| || || Sbjct 38965096 GACACCATTGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 38965037 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| | |||||| ||| || || | ||||| || Sbjct 38965036 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38964977 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | |||||||| || || Sbjct 38964976 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38964948 >seq10 Length=21498587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||| || || ||||| || || ||||| || || Sbjct 20066428 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTCA 20066369 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| ||| || || || || ||||| || ||||| || ||| Sbjct 20066368 GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAA 20066309 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| ||||| || ||| || ||||| | ||||| || Sbjct 20066308 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAAC 20066249 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| ||||| | ||||| Sbjct 20066248 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTT 20066217 >seq362 Length=95773 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||| || || |||||||| || ||||| ||| || Sbjct 39065 ATGCAAATATTTGTCAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 39124 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||| || || || || ||||| || ||||| || ||| Sbjct 39125 GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCAA 39184 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | || ||||| ||||| || ||| | || | ||||||| || Sbjct 39185 CAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAAC 39244 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| || ||||| || Sbjct 39245 ATTCAGAAGGAGTCGACTCTGCATTTGGT 39273 >seq6 Length=47127078 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | || ||||| ||||| ||| | || || || || Sbjct 42172486 ATGCAGATCTTCGTTAAGACTATAACCGGAAAGACTATCACACTCGAGGTGGAGAGCTCC 42172545 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| ||| || ||||| || || || || ||||| || || Sbjct 42172546 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 42172605 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| ||||||||||| || ||||||| | | ||||| || Sbjct 42172606 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACTCTCGCTGATTACAAC 42172665 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| |||| ||||| || ||||| Sbjct 42172666 ATCCAGAAGGAGTCGACCCTTCACTTGGTGTT 42172697 >seq8 Length=24646021 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| ||||| || || || |||| ||||| ||| Sbjct 9097760 ATGCAGATCTTTGTCAAGACACTGACGGGAAAGACCATCACTCTAGAGGTCGAGAGTTCA 9097819 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || ||||| |||||||| || ||||| || || Sbjct 9097820 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCGGACCAG 9097879 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | |||||| ||||||||||| ||| Sbjct 9097880 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 9097915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731859411801600