Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq362 91.5 3e-13 seq16 91.5 3e-13 seq10 91.5 3e-13 seq9 84.2 4e-11 >seq362 Length=95773 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || ||||| | ||| | ||| || ||| || ||||||| Sbjct 39291 CCACCACGAAGACGCAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCA 39232 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | ||||||||||| || || | |||||||||||| || || Sbjct 39231 AGCGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 39172 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || ||| || ||||| || || ||||| ||| ||| Sbjct 39171 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACT 39112 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||| || || || || || || || | ||||| |||||| Sbjct 39111 TCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTGACAAATATTTGCATT 39064 >seq16 Length=39632211 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || ||||| || || | | ||| ||||| || || || ||||| | Sbjct 14609550 CGTCTTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCT 14609491 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 |||| || || ||| || ||||| || || || || || || |||||||||| Sbjct 14609490 TATCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTCTCCACCTCTAGAGTAA 14609431 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| || ||||| ||||| |||| ||| ||||||||| Sbjct 14609430 TGGTCTTCCCAGTCAATGTCTTAACGAAAATCTGCATT 14609393 >seq10 Length=21498587 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || | || | |||| ||| || |||||||||||| Sbjct 20066427 ATTCCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGAATATTATAATCC 20066486 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| ||||| || || | |||||| ||||| ||| Sbjct 20066487 GCAAGCGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGT 20066546 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || |||||||| || || || || || || || || || Sbjct 20066547 GGGATCCCTTCCTTGTCTTGTATCTTCGCCTTCACGTTGTCAATCGTGTCAGAGCTCTCC 20066606 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||||||| ||||| | || || | ||| |||||||| Sbjct 20066607 ACCTCAAGAGTAATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 20066656 >seq9 Length=46179939 Score = 84.2 bits (92), Expect = 4e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||||| ||| || ||| ||||| || | || | || | || || | || Sbjct 43442338 ATGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCCAAGGTACGACCATCCTCGAGCTG 43442397 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || || ||||| || || ||||| || || || || || || || || ||||| || || Sbjct 43442398 CTTGCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATACCCTCCTTGTCTTGAATCTT 43442457 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 ||| ||||| ||||||||||| || || || | |||||| || || || || Sbjct 43442458 GGCTTTGACATTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGT 43442517 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 |||||| |||| ||| || ||||| Sbjct 43442518 TAATGTCTTAACGAAGATTTGCAT 43442541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905120431660800