Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq18 109 2e-19 >seq18 Length=36757632 Score = 109 bits (120), Expect = 2e-19 Identities = 359/547 (66%), Gaps = 32/547 (6%) Strand=Plus/Minus Query 33555 TCCAACGAGGGTGAGGTCGGCACGGTCATCGCGACGAACCCCTGCGGCGAGATCGCGCTG 33614 ||||||| |||||| | | |||| || || ||||| ||||| |||||| ||||| Sbjct 22717589 TCCAACGTCGGTGAGCCCAACGAGGTCGTCTGCACCAACCCGTGCGGGGAGATCACGCTG 22717530 Query 33615 GAGCCGACCGAGAACTGCAACCTCGGGCATGTGAACCTGGACTACTTCGCTCCGGAGGTT 33674 |||||| ||| ||||||||| ||||| | ||||| | |||| | || | Sbjct 22717529 GAGCCGTGGGAGCCCTGCAACCTAGGGCACATCAACCTCGCGGCGTTCGTCACCGACGCC 22717470 Query 33675 CG--AGGCGGACG-CTTCAAGCTGAAGGAGATGCACCGGGCGCACCAGCTCATGACCCGC 33731 | || | ||| | || | |||| ||| || |||| || ||||| || Sbjct 22717469 GGGAAGACCGACTACATCGACCTGAT---------CCGAGCCCACCGTCTGATGACGCGG 22717419 Query 33732 TTCCTGATCCGAGCCACCTTCGGCGACGTGACGGA--CGGGGAGCAG-GCGGC-CAAGCT 33787 ||||||||||| || || ||| | || | || || |||| | | || | | | Sbjct 22717418 TTCCTGATCCGGGCGACGTTCTCAGCGGTCGCTGATCCGAAGAGCCGAGAGGTTCTGGAT 22717359 Query 33788 CGCGGCCAACCGGCGCATCGGCGTGGGTCACCTCGGGGTCCAGGGCTTCCT----GGCCA 33843 ||| |||||||||||||| || || |||||||| || ||| |||| |||| Sbjct 22717358 CGC----AACCGGCGCATCGGTGTTGGGCACCTCGGAGT----GGCCTCCTATTTGGCCC 22717307 Query 33844 AGATGGGCATCCGCTACTCGAACGC-CCCGTACAACGAGAACTTCCGGGCTCGACTCCGG 33902 || ||| | || ||| | || |||| | | | || ||| ||| | ||| Sbjct 22717306 TGACAGGCCGTAGGTATTCGCAGGCACCCGGAGA-CAAGCGGTTCACCGCTTTCTTGCGG 22717248 Query 33903 GACATGTACGACACGGTCCGCGACGAGGCTCGGGAGTAC-GCCTTCCAGCTCCGCATCCC 33961 || ||| || |||| | | ||| ||||| | ||| | || | || ||||| Sbjct 22717247 GAGATGGCCGCTGAGGTCGACAGAGCGGCCGAGGAGTTCAGCCATG-AGTTGCGGATCCC 22717189 Query 33962 GGAGCCGGTGAAGGTGACGACTGTGGCCCCGACCGGCTCGATCGCGAAGCTGCCTGGCGT 34021 || |||||| ||| | || ||||||||||| || | ||||||||| ||||||| || Sbjct 22717188 GGTGCCGGTCAAGAAGCGCACGGTGGCCCCGACAGGGACCATCGCGAAGATGCCTGGAGT 22717129 Query 34022 GAGCGAAGGCATCCACCCGATCTACGCCCGGACGTTCCTCCGTCGAGTCCGCTTCTCCAT 34081 || || || ||||||||||||| | ||||| ||| |||| || |||| ||||| | Sbjct 22717128 CAGTGAGGGTATCCACCCGATCTTCTCCCGGTACTTCATCCGGCGCATCCGGTTCTCGGT 22717069 Query 34082 GCCGGAC 34088 || |||| Sbjct 22717068 GCTGGAC 22717062 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33257 CGAGGCCATGGAGATCGACCACGCCATTGCGGAGTGTGTCGTCTCGGGTGGTGTCCGGCG 33316 ||| || |||||||||||||||||||| ||| ||||||| || | || ||||| || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 33317 CTCGGCTCGCATGGCGATCGTGAAGTGGG 33345 ||||||||||||||||| || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163882122122368