Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq18 114 4e-21 >seq18 Length=36757632 Score = 114 bits (126), Expect = 4e-21 Identities = 360/547 (66%), Gaps = 32/547 (6%) Strand=Plus/Minus Query 33843 TCCAACGAGGGTGAGGTCGGCACGGTCATCGCGACGAACCCCTGCGGCGAGATCGCTCTG 33902 ||||||| |||||| | | |||| || || ||||| ||||| |||||| | ||| Sbjct 22717589 TCCAACGTCGGTGAGCCCAACGAGGTCGTCTGCACCAACCCGTGCGGGGAGATCACGCTG 22717530 Query 33903 GAGCCGACCGAGAACTGCAACCTCGGGCACGTGAACCTGGACTACTTCGCTCCGGAGGTT 33962 |||||| ||| ||||||||| |||||| | ||||| | |||| | || | Sbjct 22717529 GAGCCGTGGGAGCCCTGCAACCTAGGGCACATCAACCTCGCGGCGTTCGTCACCGACGCC 22717470 Query 33963 CG--AGGCGGACG-CTTCAAGCTGAAGGAGATGCACCGGGCGCACCAGCTCATGACCCGC 34019 | || | ||| | || | |||| ||| || |||| || ||||| || Sbjct 22717469 GGGAAGACCGACTACATCGACCTGAT---------CCGAGCCCACCGTCTGATGACGCGG 22717419 Query 34020 TTCCTGATCCGAGCCACCTTCGGCGACGTGACGGA--CGGGGAGCAG-GCGGC-CAAGCT 34075 ||||||||||| || || ||| | || | || || |||| | | || | | | Sbjct 22717418 TTCCTGATCCGGGCGACGTTCTCAGCGGTCGCTGATCCGAAGAGCCGAGAGGTTCTGGAT 22717359 Query 34076 CGCGGCCAACCGGCGCATCGGCGTGGGTCACCTCGGGGTCCAGGGCTTCCT----GGCCA 34131 ||| |||||||||||||| || || |||||||| || ||| |||| |||| Sbjct 22717358 CGC----AACCGGCGCATCGGTGTTGGGCACCTCGGAGT----GGCCTCCTATTTGGCCC 22717307 Query 34132 AGATGGGCATCCGCTACTCGAACGC-CCCGTACAACGAGAACTTCCGGGCTCGACTCCGG 34190 || ||| | || ||| | || |||| | | | || ||| ||| | ||| Sbjct 22717306 TGACAGGCCGTAGGTATTCGCAGGCACCCGGAGA-CAAGCGGTTCACCGCTTTCTTGCGG 22717248 Query 34191 GACATGTACGACACGGTCCGCGACGAGGCTCGGGAGTAC-GCCTTCCAGCTCCGCATCCC 34249 || ||| || |||| | | ||| ||||| | ||| | || | || ||||| Sbjct 22717247 GAGATGGCCGCTGAGGTCGACAGAGCGGCCGAGGAGTTCAGCCATG-AGTTGCGGATCCC 22717189 Query 34250 GGAGCCGGTGAAGGTGACGACTGTGGCCCCGACCGGCTCGATCGCGAAGCTGCCTGGCGT 34309 || |||||| ||| | || ||||||||||| || | ||||||||| ||||||| || Sbjct 22717188 GGTGCCGGTCAAGAAGCGCACGGTGGCCCCGACAGGGACCATCGCGAAGATGCCTGGAGT 22717129 Query 34310 GAGCGAGGGCATCCACCCGATCTACGCCCGGACGTTCCTCCGTCGAGTCCGCTTCTCCAT 34369 || ||||| ||||||||||||| | ||||| ||| |||| || |||| ||||| | Sbjct 22717128 CAGTGAGGGTATCCACCCGATCTTCTCCCGGTACTTCATCCGGCGCATCCGGTTCTCGGT 22717069 Query 34370 GCCGGAC 34376 || |||| Sbjct 22717068 GCTGGAC 22717062 Score = 93.3 bits (102), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33545 CGAGGCCATGGAGATCGACCACGCCATCGCGGAGTGTGTCGTCTCGGGTGGTGTCCGGCG 33604 ||| || |||||||||||||||||||||||| ||||||| || | || ||||| || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 33605 CTCGGCTCGCATGGCGATCGTGAAGTGGG 33633 ||||||||||||||||| || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164842106435968