Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021324.1 Length=53369 Score E Sequences producing significant alignments: (Bits) Value seq18 122 3e-23 seq9 122 3e-23 seq8 80.6 9e-11 >seq18 Length=36757632 Score = 122 bits (134), Expect = 3e-23 Identities = 391/602 (65%), Gaps = 30/602 (5%) Strand=Plus/Minus Query 7758 GTGTGGAGACGCCCAGCGGCGTGGCTGCAGCAGGGTACTGGGGTTCACGCGGTGGCTGAG 7817 |||||| || |||||||| ||||||| |||||| |||| | | ||||| || |||||| Sbjct 22718726 GTGTGGCAGCGGCCAGCGGCCTGGCTGCCGCAGGGGACTGCGTTCCACGCTGTCGCTGAG 22718667 Query 7818 AAATACATGCTCTCGAAGCTCGCCGGCTCACCGCTGACGCGCGAAGAGTGCTATGAGATC 7877 | | | | | || | |||| |||||||||| || ||| | | || || Sbjct 22718666 GCGGTCGAGGTATGGGAGTCCTACGGCATGCCGCTGACGCTTGACGAGGCCAAGGACATG 22718607 Query 7878 TTCAA--GGCCGAGTACGCCGACGGGATCAACGAAGCT--ACCGAGGAGACCCCTAACCT 7933 ||| ||| | |||||| ||| | || || |||||||||||||| ||| | Sbjct 22718606 TTCCGTTGGC--ACTACGCCAACGACGTTG--GAGCCTTCACCGAGGAGACCCCGAACTT 22718551 Query 7934 GGGGTGGTGGTTCTCTTCCGGGCCGTACCGCGGCGCGGACGACATCGAACGTCGCTGGGG 7993 | ||||||| | || || |||||| ||| | |||||||| || || | Sbjct 22718550 CGAGTGGTGGACGTGGTCTGGTCCGTACAACGGTCAGCGAGACATCGAGCGCCGGTACAC 22718491 Query 7994 TATCGGGCTCCAGCAGGTGGACAAGACCCTGGACTGGATCGACAACCACCAGAGCCTAGA 8053 |||| || ||||||| || ||| | | | ||| || | | || | ||| || Sbjct 22718490 CGTCGGCCTGGAGCAGGTCGAGAAGTTCTTCGCGTGGCGGGAGA--CTCCGG-GCCAGGA 22718434 Query 8054 GGTGTGGCACACACCGGACGGTACCCCGGGGATAGAGCTCGCGATCGAGTTCGAGCTCGA 8113 | | ||| || ||||||||||| || | ||| ||||| ||||| |||||||||| Sbjct 22718433 GATCTGGGTGACCCCGGACGGTACGCCAGCGATCGAGCTGTACTTCGAGATCGAGCTCGA 22718374 Query 8114 TGGGATAGAGATCCGGGGCTACATCGACGCGGTGCTCGTGCTCGACGGTGANNNNNNNNN 8173 ||||| | | || || ||||||||||| || ||||| ||||||| || Sbjct 22718373 CGGGATCCTGGTTCGCGGATACATCGACGCCGTCGTCGTGGTCGACGGGGAGCTTCGAGT 22718314 Query 8174 NNNNNNNTGGAAGACCGGACTCAAGCCCGGAGATGACTTTCAGCTCGCGGTGTACGCGCT 8233 | |||||||| | | || || || ||||| ||||||| ||||||||||| Sbjct 22718313 CCGGGACTACAAGACCGGGAACCAACCGGGTGACGACTTCCAGCTCGGCGTGTACGCGCT 22718254 Query 8234 GGC--CCTGAAAGAGCTGTACGGCGTCGA-GATC--ACGCGCGGTGTGTACTTCA---TG 8285 || | | || | ||||| ||||| | || | | ||| | ||||||| || Sbjct 22718253 CGCGGTCGCGATGACC--TACGGTGTCGAGGCTCCGAAGACCGGCGACTACTTCATGGTG 22718196 Query 8286 GCGAAGACCGG---------TAAGCCGACGTATCCGTACGACCTGACGGACTGGACGCGG 8336 | ||||| || |||||||| | || |||||||||||| | |||||||| Sbjct 22718195 GGGAAGAAGGGCAAGGCACCGAAGCCGACCAAGCCCTACGACCTGACGAAGTGGACGCGT 22718136 Query 8337 GA 8338 || Sbjct 22718135 GA 22718134 >seq9 Length=46179939 Score = 122 bits (134), Expect = 3e-23 Identities = 391/602 (65%), Gaps = 30/602 (5%) Strand=Plus/Plus Query 7758 GTGTGGAGACGCCCAGCGGCGTGGCTGCAGCAGGGTACTGGGGTTCACGCGGTGGCTGAG 7817 |||||| || |||||||| ||||||| |||||| |||| | | ||||| || |||||| Sbjct 16531618 GTGTGGCAGCGGCCAGCGGCCTGGCTGCCGCAGGGGACTGCGTTCCACGCTGTCGCTGAG 16531677 Query 7818 AAATACATGCTCTCGAAGCTCGCCGGCTCACCGCTGACGCGCGAAGAGTGCTATGAGATC 7877 | | | | | || | |||| |||||||||| || ||| | | || || Sbjct 16531678 GCGGTCGAGGTATGGGAGTCCTACGGCATGCCGCTGACGCTTGACGAGGCCAAGGACATG 16531737 Query 7878 TTCAA--GGCCGAGTACGCCGACGGGATCAACGAAGCT--ACCGAGGAGACCCCTAACCT 7933 ||| ||| | |||||| ||| | || || |||||||||||||| ||| | Sbjct 16531738 TTCCGTTGGC--ACTACGCCAACGACGTTG--GAGCCTTCACCGAGGAGACCCCGAACTT 16531793 Query 7934 GGGGTGGTGGTTCTCTTCCGGGCCGTACCGCGGCGCGGACGACATCGAACGTCGCTGGGG 7993 | ||||||| | || || |||||| ||| | |||||||| || || | Sbjct 16531794 CGAGTGGTGGACGTGGTCTGGTCCGTACAACGGTCAGCGAGACATCGAGCGCCGGTACAC 16531853 Query 7994 TATCGGGCTCCAGCAGGTGGACAAGACCCTGGACTGGATCGACAACCACCAGAGCCTAGA 8053 |||| || ||||||| || ||| | | | ||| || | | || | ||| || Sbjct 16531854 CGTCGGCCTGGAGCAGGTCGAGAAGTTCTTCGCGTGGCGGGAGA--CTCCGG-GCCAGGA 16531910 Query 8054 GGTGTGGCACACACCGGACGGTACCCCGGGGATAGAGCTCGCGATCGAGTTCGAGCTCGA 8113 | | ||| || ||||||||||| || | ||| ||||| ||||| |||||||||| Sbjct 16531911 GATCTGGGTGACCCCGGACGGTACGCCAGCGATCGAGCTGTACTTCGAGATCGAGCTCGA 16531970 Query 8114 TGGGATAGAGATCCGGGGCTACATCGACGCGGTGCTCGTGCTCGACGGTGANNNNNNNNN 8173 ||||| | | || || ||||||||||| || ||||| ||||||| || Sbjct 16531971 CGGGATCCTGGTTCGCGGATACATCGACGCCGTCGTCGTGGTCGACGGGGAGCTTCGAGT 16532030 Query 8174 NNNNNNNTGGAAGACCGGACTCAAGCCCGGAGATGACTTTCAGCTCGCGGTGTACGCGCT 8233 | |||||||| | | || || || ||||| ||||||| ||||||||||| Sbjct 16532031 CCGGGACTACAAGACCGGGAACCAACCGGGTGACGACTTCCAGCTCGGCGTGTACGCGCT 16532090 Query 8234 GGC--CCTGAAAGAGCTGTACGGCGTCGA-GATC--ACGCGCGGTGTGTACTTCA---TG 8285 || | | || | ||||| ||||| | || | | ||| | ||||||| || Sbjct 16532091 CGCGGTCGCGATGACC--TACGGTGTCGAGGCTCCGAAGACCGGCGACTACTTCATGGTG 16532148 Query 8286 GCGAAGACCGG---------TAAGCCGACGTATCCGTACGACCTGACGGACTGGACGCGG 8336 | ||||| || |||||||| | || |||||||||||| | |||||||| Sbjct 16532149 GGGAAGAAGGGCAAGGCACCGAAGCCGACCAAGCCCTACGACCTGACGAAGTGGACGCGT 16532208 Query 8337 GA 8338 || Sbjct 16532209 GA 16532210 >seq8 Length=24646021 Score = 80.6 bits (88), Expect = 9e-11 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 42288 TCGTTCTCGACGGCGTGGATGATCTGCTGACGGCCTGCGTTCTCCACCTCGCGCACCG-C 42346 ||||||| ||| ||| ||||||||| | || ||||| ||||||| |||||||| | | Sbjct 19508385 TCGTTCTTGACAGCGCCGATGATCTGTCGGCGACCTGCCATCTCCACTTCGCGCACTGTC 19508444 Query 42347 GCGCAGCGTCAGGTGAGTCAGCGCGTCCCCGCGGGTGTCCGCCTGCTGCATCCGCTCACG 42406 || || ||||| | || | ||| | | | ||| |||||| || || || || Sbjct 19508445 GCCAAG-GTCAGCTTGGTGACCGCAGCTTGAGGAGAGTCGGCCTGCGACAACCCCTTTCG 19508503 Query 42407 AGCCGGGTCCATGTTCTCGACGAACTTCTCGAAC-GTCGTCCCCTCCAGGGGCCGATCGT 42465 || || ||||||||| ||||||| ||| || | | | |||| | || |||| Sbjct 19508504 TGCGGGCTCCATGTTCCTGACGAACCACTCCCACTGGAGGTCGCTCC-GCAACCTCTCGT 19508562 Query 42466 TACGAGGGAGATCCGGGCGGTGCTGAGCC--CGCTGCGAGTCGTAGAA 42511 | || || || |||||| |||| ||| | ||||| ||||||||||| Sbjct 19508563 TGCGGGGAAGCTCCGGGTGGTG--GAGTCTGCGCTGGGAGTCGTAGAA 19508608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170656411428672