Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 5e-14 >seq18 Length=36757632 Score = 91.5 bits (100), Expect = 5e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34001 CGCATCCCGGAGCCCGTGAAGGTGACGACCGTGGCCCCGACCGGCTCGATCGCGAAGCTC 34060 || ||||||| ||| || ||| | || ||||||||||| || | ||||||||| | Sbjct 22717196 CGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCCCGACAGGGACCATCGCGAAGATG 22717137 Query 34061 CCCGGAGTGAGCGAGGGCATCCACCCGATCTACGCCCGGACGTTCCTCCGTCGAGTGCGC 34120 || ||||| || ||||| ||||||||||||| | ||||| ||| |||| || | || Sbjct 22717136 CCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCCGGTACTTCATCCGGCGCATCCGG 22717077 Query 34121 TTCTCCATGCCGGAC 34135 ||||| ||| |||| Sbjct 22717076 TTCTCGGTGCTGGAC 22717062 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33304 CGAGGCCATGGAGATCGACCACGCCATCGCGGAGTGTGTCGTCTCGGGTGGTGTCCGGCG 33363 ||| || |||||||||||||||||||||||| ||||||| || | || ||||| || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 33364 CTCGGCTCGCATGGCCATCGTGAAGTGGG 33392 |||||||||||||| || || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163322131272768