Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq82 159 4e-34 >seq82 Length=657493 Score = 159 bits (176), Expect = 4e-34 Identities = 323/479 (67%), Gaps = 13/479 (3%) Strand=Plus/Minus Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707 || ||||| || || |||||| |||| || | |||||||| || || ||| | || Sbjct 461233 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 461174 Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41767 || | ||||||| | |||| || | |||| | || ||| || | | || || Sbjct 461173 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 461114 Query 41768 AAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGT 41827 || ||| |||| ||||| || || || ||| | || || ||| | ||||| || | ||| Sbjct 461113 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 461054 Query 41828 TCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATT 41887 | || | ||| |||||| ||||||| || || || || | |||||| || Sbjct 461053 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 460994 Query 41888 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTAT 41947 || | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | | Sbjct 460993 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 460934 Query 41948 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 42007 ||||| || |||||||| ||| |||||| | | ||| | ||||| || | || || Sbjct 460933 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 460874 Query 42008 GAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAA 42067 ||| | || | | |||||| | ||||||| ||||| |||| | ||||||||| || Sbjct 460873 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTATCAA 460814 Query 42068 CG-----TTTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGCTAAC 42118 | | | | ||| || ||||||| | || |||| |||||||| ||||| Sbjct 460813 AGATTATTATCAGGAAAAAAAATTACAT-----TATTTAGCCCGTCTGATGTTCCTAAC 460760 Score = 113 bits (124), Expect = 5e-20 Identities = 206/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 43395 TTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTGT 43454 ||||||||||||| | |||||| | | | | |||||||| | | |||||||||||| | Sbjct 459427 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 459368 Query 43455 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAAA 43514 | || || ||| |||| |||||| | ||||| || || | || | | | || Sbjct 459367 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 459308 Query 43515 TGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGATA 43574 | || |||||||||||| ||||| | ||| | |||||||||| || | || Sbjct 459307 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 459248 Query 43575 CCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTGCCTCTGATGTATCAATGG 43634 | ||||| ||| | | |||||| |||| ||||| || ||| ||| | | | | Sbjct 459247 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 459188 Query 43635 AAACGTGGATCGAAACATGGGCGTTCAGTGAAACAATTCACAGTCGCAGTTATACGCACA 43694 |||| ||||| ||||||||| | || ||||| |||||| || |||||| || | Sbjct 459187 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATA 459128 Query 43695 TT 43696 || Sbjct 459127 TT 459126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563788702667520