Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_021556.1
Length=39981
Score E
Sequences producing significant alignments: (Bits) Value
seq9 2742 0.0
>seq9
Length=46179939
Score = 2742 bits (3040), Expect = 0.0
Identities = 1533/1545 (99%), Gaps = 0/1545 (0%)
Strand=Plus/Minus
Query 28260 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 28319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699569 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 27699510
Query 28320 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 28379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699509 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 27699450
Query 28380 ATNNNNNNNNNNAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 28439
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699449 ATTCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 27699390
Query 28440 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 28499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699389 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 27699330
Query 28500 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 28559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699329 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 27699270
Query 28560 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 28619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699269 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 27699210
Query 28620 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 28679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699209 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 27699150
Query 28680 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 28739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699149 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 27699090
Query 28740 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 28799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27699089 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 27699030
Query 28800 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACCCCCGAAGGAATAGTTCGAATGTCA 28859
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 27699029 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 27698970
Query 28860 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 28919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698969 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 27698910
Query 28920 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 28979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698909 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 27698850
Query 28980 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 29039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698849 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 27698790
Query 29040 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 29099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698789 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 27698730
Query 29100 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 29159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698729 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 27698670
Query 29160 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 29219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698669 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 27698610
Query 29220 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 29279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698609 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 27698550
Query 29280 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 29339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698549 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 27698490
Query 29340 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 29399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698489 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 27698430
Query 29400 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 29459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698429 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 27698370
Query 29460 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 29519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698369 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 27698310
Query 29520 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 29579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698309 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 27698250
Query 29580 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 29639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698249 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 27698190
Query 29640 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 29699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698189 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 27698130
Query 29700 GGATCGACCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 29759
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698129 GGATCGGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 27698070
Query 29760 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 29804
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27698069 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 27698025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127815511460416
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