Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021556.1 Length=39981 Score E Sequences producing significant alignments: (Bits) Value seq9 2742 0.0 >seq9 Length=46179939 Score = 2742 bits (3040), Expect = 0.0 Identities = 1533/1545 (99%), Gaps = 0/1545 (0%) Strand=Plus/Minus Query 28260 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 28319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699569 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 27699510 Query 28320 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 28379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699509 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 27699450 Query 28380 ATNNNNNNNNNNAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 28439 || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699449 ATTCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 27699390 Query 28440 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 28499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699389 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 27699330 Query 28500 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 28559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699329 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 27699270 Query 28560 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 28619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699269 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 27699210 Query 28620 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 28679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699209 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 27699150 Query 28680 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 28739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699149 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 27699090 Query 28740 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 28799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699089 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 27699030 Query 28800 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACCCCCGAAGGAATAGTTCGAATGTCA 28859 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 27699029 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 27698970 Query 28860 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 28919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698969 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 27698910 Query 28920 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 28979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698909 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 27698850 Query 28980 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 29039 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698849 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 27698790 Query 29040 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 29099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698789 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 27698730 Query 29100 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 29159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698729 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 27698670 Query 29160 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 29219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698669 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 27698610 Query 29220 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 29279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698609 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 27698550 Query 29280 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 29339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698549 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 27698490 Query 29340 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 29399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698489 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 27698430 Query 29400 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 29459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698429 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 27698370 Query 29460 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 29519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698369 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 27698310 Query 29520 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 29579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698309 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 27698250 Query 29580 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 29639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698249 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 27698190 Query 29640 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 29699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698189 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 27698130 Query 29700 GGATCGACCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 29759 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698129 GGATCGGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 27698070 Query 29760 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 29804 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698069 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 27698025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127815511460416