Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021794.1 Length=71443 Score E Sequences producing significant alignments: (Bits) Value seq341 134 6e-27 >seq341 Length=107858 Score = 134 bits (148), Expect = 6e-27 Identities = 364/547 (67%), Gaps = 24/547 (4%) Strand=Plus/Plus Query 14955 AACTGTATTTAGTTGTTTTGCTTGCGGTGGTGGTTCTACAATGGGTTATAAACTTGCAGG 15014 || |||||||||||||||||| || |||||||| ||||| ||||| |||||| | ||||| Sbjct 17401 AAATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGG 17460 Query 15015 TTTTGACGTTATTGGGA---TGAATGAAATCGACCCTAAAATGGCTGATTGCTACATTGA 15071 | || |||| ||| || ||| || || ||| |||||| || | || || | Sbjct 17461 -CTGCACAGTATTAGGAAATTG--TGACATAGATCCTCAAATGGTTGCAT--TATATCAA 17515 Query 15072 A--AACCATAATCCTAAATACTCTTATGTTGAA--GATATACGAACTTTTAAAGATA--- 15124 | || ||||| || || || || ||| | |||||| || |||||||||| Sbjct 17516 AACAATCATAAGCCACGCTATTCGTA--TTGCATGGATATAAGAGAATTTAAAGATATCC 17573 Query 15125 -GAA--CAGACCTACCCAAAGAACTTTATGATTTAGATATTTTGGATGGCTCTCCTCCTT 15181 || | | ||||| |||||| | | |||||||||| |||||||| || || || | Sbjct 17574 CTAATGCTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCAT 17633 Query 15182 GCAGTAGTTTTAGTATGGCTGGAAATCGTGAAAAAGATTGGGGA--AAAGAAAAGAAGTT 15239 | | ||| || || || | ||| ||| |||||| |||||| || Sbjct 17634 GTTCTTCATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGGAGTTAAGAAA--TCTTT 17691 Query 15240 TAGAGAAGGACAAGCCGACCAGGTGTTAGATACTTTGTTCTTTGATTTTATAGAACTTGC 15299 | |||| || ||||| | || || |||||| | |||||||||| ||||| | | | || Sbjct 17692 TCGAGAGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGC 17751 Query 15300 TGAAAAGCTACAGCCAAAAATAGTAATTGCTGAAAATGTGAAAGGTATTTTAATGGGTGA 15359 || ||| || | |||||| | | |||| || ||||| | ||| || | || || | Sbjct 17752 AGAGAAGTTAAAACCAAAAGTTATTGTTGCAGAGAATGTAACAGGAATGATTATAGGGAA 17811 Query 15360 TGCGAAAGATTATGTTAGAAAAATATTGTCAGATTTTGACAAAGCCGGATATGTTGTACA 15419 ||||||| || || | | || | | || |||| | | ||||||| ||| || Sbjct 17812 AGCGAAAGGGTACGTAAAAGAAGTTATCCAAGGTTTTCAGGATATTGGATATGATGTGCA 17871 Query 15420 GGAATTTTGTTTAGATGCAAGTAGAATGGGAATACCACAAAAAAGGGAACGAGTTTTCTT 15479 | ||| || ||||| | |||||| || || |||| ||| || || | || || Sbjct 17872 GCTGTTTAAATTGAATGCAGCAACAATGGGTATTCCGCAAAGAAGAGAGCGGATATTTTT 17931 Query 15480 TATAGCA 15486 ||| ||| Sbjct 17932 TATTGCA 17938 Score = 134 bits (148), Expect = 6e-27 Identities = 364/547 (67%), Gaps = 24/547 (4%) Strand=Plus/Plus Query 14955 AACTGTATTTAGTTGTTTTGCTTGCGGTGGTGGTTCTACAATGGGTTATAAACTTGCAGG 15014 || |||||||||||||||||| || |||||||| ||||| ||||| |||||| | ||||| Sbjct 67958 AAATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGG 68017 Query 15015 TTTTGACGTTATTGGGA---TGAATGAAATCGACCCTAAAATGGCTGATTGCTACATTGA 15071 | || |||| ||| || ||| || || ||| |||||| || | || || | Sbjct 68018 -CTGCACAGTATTAGGAAATTG--TGACATAGATCCTCAAATGGTTGCAT--TATATCAA 68072 Query 15072 A--AACCATAATCCTAAATACTCTTATGTTGAA--GATATACGAACTTTTAAAGATA--- 15124 | || ||||| || || || || ||| | |||||| || |||||||||| Sbjct 68073 AACAATCATAAGCCACGCTATTCGTA--TTGCATGGATATAAGAGAATTTAAAGATATCC 68130 Query 15125 -GAA--CAGACCTACCCAAAGAACTTTATGATTTAGATATTTTGGATGGCTCTCCTCCTT 15181 || | | ||||| |||||| | | |||||||||| |||||||| || || || | Sbjct 68131 CTAATGCTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCAT 68190 Query 15182 GCAGTAGTTTTAGTATGGCTGGAAATCGTGAAAAAGATTGGGGA--AAAGAAAAGAAGTT 15239 | | ||| || || || | ||| ||| |||||| |||||| || Sbjct 68191 GTTCTTCATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGGAGTTAAGAAA--TCTTT 68248 Query 15240 TAGAGAAGGACAAGCCGACCAGGTGTTAGATACTTTGTTCTTTGATTTTATAGAACTTGC 15299 | |||| || ||||| | || || |||||| | |||||||||| ||||| | | | || Sbjct 68249 TCGAGAGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGC 68308 Query 15300 TGAAAAGCTACAGCCAAAAATAGTAATTGCTGAAAATGTGAAAGGTATTTTAATGGGTGA 15359 || ||| || | |||||| | | |||| || ||||| | ||| || | || || | Sbjct 68309 AGAGAAGTTAAAACCAAAAGTTATTGTTGCAGAGAATGTAACAGGAATGATTATAGGGAA 68368 Query 15360 TGCGAAAGATTATGTTAGAAAAATATTGTCAGATTTTGACAAAGCCGGATATGTTGTACA 15419 ||||||| || || | | || | | || |||| | | ||||||| ||| || Sbjct 68369 AGCGAAAGGGTACGTAAAAGAAGTTATCCAAGGTTTTCAGGATATTGGATATGATGTGCA 68428 Query 15420 GGAATTTTGTTTAGATGCAAGTAGAATGGGAATACCACAAAAAAGGGAACGAGTTTTCTT 15479 | ||| || ||||| | |||||| || || |||| ||| || || | || || Sbjct 68429 GCTGTTTAAATTGAATGCAGCAACAATGGGTATTCCGCAAAGAAGAGAGCGGATATTTTT 68488 Query 15480 TATAGCA 15486 ||| ||| Sbjct 68489 TATTGCA 68495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228488968175744