Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq82 102 5e-17 >seq82 Length=657493 Score = 102 bits (112), Expect = 5e-17 Identities = 160/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216 || ||||||| ||| ||||| || || || || ||| || | ||||| || || Sbjct 284385 TGTGCTAATAATGTTGCTGTAGTAGTACCGTCACCTGCTGCATCATTAGCTTTTGATGCA 284326 Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276 |||| ||| | |||||| || || | |||||| ||| ||||||||| | ||||| | | Sbjct 284325 ACTTCTTTTACCATTTGTGCTCCCATGTTTTCGAATTTATCTTCTAATTCGATTTCACGA 284266 Query 96277 GCCACACTTACACCATCTTTAGTAATGATTGG------ATTATACTGGTCTAAACCTAGT 96330 || || |||||||||||||||||| | || | | | | |||||| Sbjct 284265 GCTACTGATACACCATCTTTAGTAATACTAGGTGCGCCAAAAGATTTATCTAAA------ 284212 Query 96331 ATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAA 96380 | |||||| ||||| ||| |||| ||||||||| ||||||| ||||| Sbjct 284211 ACAACATTTCTACCTTTTGGACCTAAAGTTACTTTTACTGCATCTGCTAA 284162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321207413261344