Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq477 104 6e-18 >seq477 Length=38297 Score = 104 bits (114), Expect = 6e-18 Identities = 88/106 (83%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 31018 AAAAAGCGG-GTTTTCACCCGTCAGAATCTGGCGGGGATCCGTCAGTAAAATCAAAACAT 31076 |||||| | ||| ||||||| |||||||||| ||||||||||||||||| |||||||| Sbjct 29704 AAAAAGGGCAGTTCTCACCCGCCAGAATCTGGAGGGGATCCGTCAGTAAATTCAAAACAA 29645 Query 31077 GATCCGTCAGATAAAAAACCTTCTCGTCCGGACGCTTCGCA-ACCG 31121 ||||| |||| |||||||||| || ||| | ||| |||| |||| Sbjct 29644 GATCCATCAGGTAAAAAACCTACTTGTCAGCCTGCTGCGCAGACCG 29599 Score = 80.6 bits (88), Expect = 7e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 28450 TCAACGAATCATCCTGGACTTCATATGCCCCAGGCGGCTACTTCGTGGGCGTCCTGCCTG 28509 ||| |||||||||| | |||| | |||| | |||||||||||||||||||||||||||| Sbjct 33170 TCAGCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTG 33111 Query 28510 TTCG 28513 |||| Sbjct 33110 TTCG 33107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132596233342144