Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16 105 6e-18 seq362 104 2e-17 seq10 104 2e-17 seq14 93.3 3e-14 seq18 86.0 5e-12 seq7 84.2 2e-11 >seq16 Length=39632211 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| |||||||| || || |||||||| |||| |||| || || | || | ||| Sbjct 7064206 TGCGCACCCAGCTCACAGCCAAAGTACTTGGTCGTGTAAGCAGCAGGTCTCCCCAAGGCC 7064147 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 ||||||||||| |||||| || | ||||||||||||||| || | ||||||| | Sbjct 7064146 TTGGCGATTTCAACCATGTTAACAACATTAGTCTTGATGCCGTTACCTCTACCTTCGATC 7064087 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||| || | |||||| ||||| | ||||||||| || Sbjct 7064086 TTGGTCATCATCCTCGGCATCTTGTACCTGTAGAACGCATC 7064046 >seq362 Length=95773 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||||||||||||||| ||||| || ||||| || |||||| | ||| || || Sbjct 39064 AATGCAAATATTTGTCAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 39123 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| ||||| ||||| | || ||| | Sbjct 39124 A-GACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 39182 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | || ||||||||||| ||||||| | || | || ||||||| Sbjct 39183 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACA 39242 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||| || || || || |||| |||| Sbjct 39243 ACATTCAGAAGGAGTCGACTCTGCATTTGGT 39273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||||| || || ||||| | |||||||| |||||||| |||| || |||| || Sbjct 37697 ATGCAAATTTTCGTGAAAACGCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCT 37756 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || ||||| ||||| |||||| | || |||| Sbjct 37757 GAC---ACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGAT 37813 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||||||||| ||||||| | || ||||||||||| Sbjct 37814 CAGCAGAGGCTCATCTTTGCCGGTAAACAGCTAGAGGATGGACGTACCTTGGCGGATTAC 37873 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 37874 AACATCCAGAAGGAGTCAAC 37893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| || | ||||||||||| |||||| | || ||| || Sbjct 38153 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACAATTACCTTGGAGGTTGAGAGCTCT 38212 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| |||||| ||||| |||||| | || || Sbjct 38213 GAC---ACAATCGACAATGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGAC 38269 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | || || || ||||||||||||| | ||| | || |||||| Sbjct 38270 CAGCAGAGACTCATCTTCGCAGGGAAGCAGCTGGAGGATGGACGCACACTCGCTGATTAC 38329 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || ||| | || |||| | | ||| |||| || Sbjct 38330 AACATCCAGAAAGAGTCCACGCTCCATTTGGTACTTCGTCTGAGAGGTGG 38379 >seq10 Length=21498587 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||||||||| || ||||| || ||||| || || ||| | ||| ||| || Sbjct 20066429 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 20066370 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| ||||| ||||| | || ||| | Sbjct 20066369 A-GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 20066311 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | || ||||||||||| ||||||| || || |||| ||||||| Sbjct 20066310 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 20066251 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| || || || || || | ||| | ||||| | || || || |||| Sbjct 20066250 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGAA 20066200 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| || || ||||| ||||| |||||| | || ||| || Sbjct 20067340 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTCT 20067281 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| |||||| ||||| |||||| | || || Sbjct 20067280 GAC---ACGATTGACAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGAC 20067224 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||||| || | || || || ||||||||||||| | ||| | || |||||| Sbjct 20067223 CAGCAGAGACTCATCTTCGCAGGGAAGCAGCTGGAGGATGGACGCACACTCGCTGATTAC 20067164 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || ||| | || |||| | | ||| |||| || Sbjct 20067163 AACATCCAGAAAGAGTCCACGCTCCATTTGGTACTTCGTCTGAGAGGTGG 20067114 >seq14 Length=60807478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG-AGCCTGA 110331 ||||| || |||||||| || || || || ||||| ||||| | || || || Sbjct 28597319 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28597260 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | | || ||| ||||| ||||| || || | || ||| || Sbjct 28597259 CGATACTATTGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 28597200 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | || || || ||||| || || | ||||||| ||||||| ||||| Sbjct 28597199 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACAA 28597140 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| || ||||| | ||| ||||||| | ||||| || || Sbjct 28597139 CATTCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 28597092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||||| ||||| || || | || ||||| ||||| || Sbjct 8832320 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 8832379 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 |||| |||||| |||||||||||||||| || ||||| ||||| Sbjct 8832380 GATGGCAGAACCCTGGCGGATTACAACATCCAGAAAGAGTCTAC 8832423 >seq18 Length=36757632 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | |||||||| |||||||| |||| ||| | Sbjct 13968477 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCC 13968536 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| |||||| | || || || Sbjct 13968537 GACACTATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCCGACCAG 13968596 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| ||||| ||||| |||| || | || | |||||||||||| Sbjct 13968597 CAGAGACTCATCTTTGCCGGTAAGCAGCTTGAGGTTGGTCGCACGCTTGCGGATTACAAC 13968656 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || || || Sbjct 13968657 ATCCAGAAGGAGTCGAC 13968673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| |||||||| || | |||||||||||||| || | || ||| || | Sbjct 13968934 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAGGTTGAGAGCTCA 13968993 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || ||||||| ||||| ||||| | || || || Sbjct 13968994 -GACACAATAGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 13969052 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| || | || || || ||||| ||||||| | || | ||||||||||| Sbjct 13969053 GCAGAGACTCATCTTCGCTGGGAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAA 13969112 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| ||||| || |||||| | || | ||| | | || || || |||| Sbjct 13969113 CATCCAAAAGGAGTCTACGCTCCATCTTGTGCTTCGTCTTCGTGGTGGAA 13969162 >seq7 Length=43258566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 ||||| || ||||| || || |||||||| |||| |||| || || | || || ||| Sbjct 27220227 TGCGCTCCAAGCTCACAACCAAAGTACTTGGTCGTGTAAGAAGCAGGCCTCCCCAGAGCC 27220286 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 || || || ||| ||||||| ||| |||||||||||||| || || ||||| | | Sbjct 27220287 TTTGCAATCTCGACGTTGTTGACAATGTTGGTCTTGATGCCGTTACCTTTCCCTTCAATC 27220346 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||| || ||||| ||||| | ||| ||||| || Sbjct 27220347 TTGGTAACCATCTTGGGCATCTTGTACCTGTAAAACGCATC 27220387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | || | || || || |||||||| || ||||||||||| | |||| Sbjct 41420291 TTGTCATCAAACTTGGACTGAGCTCCAAGCTCGCATCCAAAGTACTTTGTAGTGTAAGAA 41420350 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || | | | ||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 41420351 GCAGGCCTCGCTAAAGCCTTGGCGATGTCGACGTTGTTGACAATGTTGGTCTTGATGCCG 41420410 Query 34552 TTGCCCTTTCCTTCG 34566 ||||| || |||||| Sbjct 41420411 TTGCCTTTGCCTTCG 41420425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834676646368