Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022062.1 Length=52102 Score E Sequences producing significant alignments: (Bits) Value seq18 111 5e-20 seq9 111 5e-20 seq8 86.0 2e-12 >seq18 Length=36757632 Score = 111 bits (122), Expect = 5e-20 Identities = 385/600 (64%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 44318 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44368 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44369 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGCTTCAACGCC 44422 ||| ||||||| ||||| | | || | ||||| ||||| | | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44423 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGACTTCCAGTCGACC 44482 ||||||||||| ||||||| ||||| || || || | | |||| ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44483 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44542 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 44543 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 44602 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 44603 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44662 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 44663 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGAGAACCACCACCCC 44722 | || || |||||||| | ||| |||||| || || | ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 44723 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44778 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 44779 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTT 44838 || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 44839 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCCGGGCGTCTCCACAC 44898 |||||| || ||||||| | | || |||||| ||||||||||||| || || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 111 bits (122), Expect = 5e-20 Identities = 385/600 (64%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 44318 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44368 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44369 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGCTTCAACGCC 44422 ||| ||||||| ||||| | | || | ||||| ||||| | | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44423 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGACTTCCAGTCGACC 44482 ||||||||||| ||||||| ||||| || || || | | |||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44483 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44542 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 44543 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 44602 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 44603 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44662 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 44663 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGAGAACCACCACCCC 44722 | || || |||||||| | ||| |||||| || || | ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 44723 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44778 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 44779 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTT 44838 || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 44839 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCCGGGCGTCTCCACAC 44898 |||||| || ||||||| | | || |||||| ||||||||||||| || || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 86.0 bits (94), Expect = 2e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 10620 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 10677 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10678 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10736 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10737 CAGCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCT-CCGAGCGGTGCGCGA 10795 |||||| ||| | | | ||| | || | ||||| | ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 10796 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 10846 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166602077677568