Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022070.1 Length=53588 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 5e-14 >seq8 Length=24646021 Score = 91.5 bits (100), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 10337 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGACCTCCCTCGTAACGATCGGCCCCTG 10396 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10397 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10455 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10456 GCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTGCGCGCC-GTCCGCGAGG 10514 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTG-GCGACAGTGCGCGAAG 19508431 Query 10515 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCCAG 10565 |||||| ||||| |||| ||||||||| ||| ||| |||||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAG 19508380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171357199977600