Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022071.1 Length=76129 Score E Sequences producing significant alignments: (Bits) Value seq1 129 3e-25 >seq1 Length=46747018 Score = 129 bits (142), Expect = 3e-25 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 65249 CGGCGCGATTCACTTCTTTTTGGACGACTACCGTTTTGAGACGGCGTTTACAAGCCCTGA 65308 |||||| | |||||||| | ||||||||||| || ||||| | | | ||||| || Sbjct 34907075 CGGCGCACTGCACTTCTTCCTTGACGACTACCGATTCGAGACCGTCTGGTCGAGCCCAGA 34907016 Query 65309 GAGGACGCTGGGGAGAGTTACAGCGGTCGGCGGTGCCCTGACACCAGATTTCAGTTTGTG 65368 | | || | || |||||| || | ||| ||||| || |||||||| | || Sbjct 34907015 GCGCCTTCTCCCCCGCGTGCAAGCGGTTGGAGCTGCTCTGACGCCCGATTTCAGCCTCTG 34906956 Query 65369 GCGCGATATGCCGCGTGCAGCGCAGCTTTGGAACGTGTACCGGTCCCGGTGGTGTGGCGC 65428 ||| || ||||| || || || | | |||||||| ||||| ||| ||||| ||||| Sbjct 34906955 GCGGGACATGCCACGGGCTGCAGCGGTCTGGAACGTCTACCGCAGCCGCTGGTGCGGCGC 34906896 Query 65429 GTACTGGCAGAGCCACGGCGTGAACGTCATTCCTACGGCCTGCTGGGCACGCTCAGACAC 65488 |||||||||| || || | | || | || || || |||||||| | ||||||| Sbjct 34906895 GTACTGGCAGTCGCAGGGGATCGAGGTGCTCCCAACCGCGTGCTGGGCGACCCCAGACAC 34906836 Query 65489 GTTCGACTTCTGTTTCGAGGG 65509 |||||||||||| ||||| || Sbjct 34906835 GTTCGACTTCTGCTTCGACGG 34906815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243483916706240