Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq15 1148 0.0 seq477 100 7e-17 >seq15 Length=39600445 Score = 1148 bits (1272), Expect = 0.0 Identities = 638/639 (99%), Gaps = 0/639 (0%) Strand=Plus/Minus Query 35316 GGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTAC 35375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017125 GGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTAC 30017066 Query 35376 ACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGA 35435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017065 ACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGA 30017006 Query 35436 TGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAA 35495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017005 TGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAA 30016946 Query 35496 AACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCG 35555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016945 AACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCG 30016886 Query 35556 CGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTT 35615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016885 CGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTT 30016826 Query 35616 ACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG 35675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016825 ACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG 30016766 Query 35676 CGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGG 35735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016765 CGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGG 30016706 Query 35736 ATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGAT 35795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016705 ATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGAT 30016646 Query 35796 ATACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGGCACGGCTGGGAC 35855 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 30016645 ATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGAC 30016586 Query 35856 GGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATC 35915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016585 GGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATC 30016526 Query 35916 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 35954 ||||||||||||||||||||||||||||||||||||||| Sbjct 30016525 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCC 30016487 Score = 309 bits (342), Expect = 8e-80 Identities = 171/171 (100%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 35185 TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG 35244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017415 TGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG 30017356 Query 35245 CTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCA 35304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017355 CTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCA 30017296 Query 35305 AAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT 35355 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017295 AAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT 30017245 >seq477 Length=38297 Score = 100 bits (110), Expect = 7e-17 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 34287 CCAAAACGTCGCCGCTGGGTTAACGAAAAGTACACGCGTTGGGTTAAGACGCAGCCGTGC 34346 ||||| ||| |||||| | || |||| || |||||||||||| | ||||| ||| Sbjct 26195 CCAAAGCGTGAGCGCTGGACCAGTGAGAAGTTTACCCGTTGGGTTAAGTCTCAGCCATGC 26136 Query 34347 GCATGTTGTGGA-AAACCTGCTGATGATCCCCACCACCTGATAGGCCACGGTCAGGGGGG 34405 ||||| || ||| ||||| | || || ||||| ||| | || |||||||| ||||| || Sbjct 26135 GCATGCTGCGGAGCAACCT-CGGACGACCCCCATCACATCATTGGCCACGGACAGGGTGG 26077 Query 34406 AATGGGTACAAAAGCGCATGACCTCTTTGTGTTGCCTTTGTGCAGAAAGCATCACGACGA 34465 ||||| || || ||||| || | || | || | |||||||| |||||||| || Sbjct 26076 CATGGGAACCAAGGCGCACGATTTTTTAACCATCCCACTTTGCAGAAAACATCACGATGA 26017 Query 34466 GCTGCAT 34472 ||||| Sbjct 26016 ATTGCAT 26010 Score = 98.7 bits (108), Expect = 3e-16 Identities = 87/106 (82%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 30819 AAAAAGCGG-GTTTTCACCCGTCAGAATCTGGCGGGGATCCGTCAGTAAAATCAAAACAT 30877 |||||| | ||| ||||||| |||||||||| ||||||||||||||||| |||||||| Sbjct 29704 AAAAAGGGCAGTTCTCACCCGCCAGAATCTGGAGGGGATCCGTCAGTAAATTCAAAACAA 29645 Query 30878 GATCCGTCAGATaaaaaaaCTTCTCGTCCGGACGCTTCGCA-ACCG 30922 ||||| |||| ||||||| || || ||| | ||| |||| |||| Sbjct 29644 GATCCATCAGGTAAAAAACCTACTTGTCAGCCTGCTGCGCAGACCG 29599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127101923120640