Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq1048 102 2e-17 >seq1048 Length=3623 Score = 102 bits (112), Expect = 2e-17 Identities = 238/354 (67%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 12796 CGAAAAATATCGGTGCCTGTCGTGCTTATAGCGGCGCTTTGAGCACTGAAGCCGGAAACT 12855 ||||| || | || ||| | || | ||||| ||| ||||| | || || || | Sbjct 1867 CGAAAGATGTTGGGGCCGCGCAAGCGTTTAGCGCGTCTTACAGCACAGGGGCTGGCAATT 1808 Query 12856 GGACAACCGCTCAGTTTATTGACTGGCTAGAGTCTCAGGGAGCCTTTAATCATCCCTACT 12915 |||| |||||| | ||||| | ||||| || | || || || | || |||| Sbjct 1807 GGACTACCGCTGAATTTATCGCATGGCTGAAGGAGCGTGGTGCTTTCGAAGTGCCGTACT 1748 Query 12916 GGATGTGCAAGTGTTCCTGGTCATACGGTAATAACAAAATTATTACCGATACTGACTGTG 12975 ||||| ||| ||||||||||||| | | || |||||||| || ||||| | ||| Sbjct 1747 GGATGATGAAGGGTTCCTGGTCATATGCCGACAATAAAATTATCACTGATACAGG-TGTC 1689 Query 12976 GG-ACGATTCATCTTGCAGGTTGCGTGATTGAGGTTATGGGCGTTAAAGCTGCAATGACC 13034 || | || |||||| ||| || || |||||| | || ||| ||||||||| Sbjct 1688 GGTAATATCTGTCTTGCTGGTGCGGTTATCGAGGTTTTAGGTACCGAAGGCGCAATGACC 1629 Query 13035 ATTCGTGTGACCACTCCGAGTACATCAAGCGGTGGCGGTACCACCAGTGCGCAATTTACG 13094 || || || || || || | || | | |||||| || | || |||| || || || Sbjct 1628 ATCCGAGTTACTACGCCTACAACGACTACCGGTGGTGGGATTGCCTGTGCTCAGTTCACC 1569 Query 13095 TATATCAATCACGG-AGCTGATTATGCGCCGGGCTGGCGACGCGACTACAATAC 13147 ||||| |||||||| ||| | ||||| || | |||||| | || ||||| || Sbjct 1568 TATATTAATCACGGTAGC-GCGTATGCCCCTGCCTGGCGCAGAGATTACAACAC 1516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107486243646080