Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022763.1 Length=164297 Score E Sequences producing significant alignments: (Bits) Value seq82 86.0 7e-12 >seq82 Length=657493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 17512 ATTACTAATTTAGGAAGCTCTCGTGGTTCATTTAATATTTGTTCCTTCGCCTGTTCAATA 17571 || ||||||||||| || | | || ||| || ||||| || || |||||| Sbjct 105257 ATGACTAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATG 105198 Query 17572 TGGTTAAGGTATAAATGAACGTCACCGCCGTTGTAAATCAAGTCTCCTACTTCTAACCCA 17631 || ||| |||| ||| || ||||| || | | | || ||||| |||||||| || Sbjct 105197 TGATTATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCA 105138 Query 17632 CATTCTAAAGCGATTAAATGTAAGAGTAATGCGTAACTAGCAATATTAAAAGCTAGTCCT 17691 |||| | || || | ||| | |||| ||| |||||||| |||||||||| || ||| Sbjct 105137 CATTGTTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCA 105078 Query 17692 AAAAATCCGTCATTAGAACG 17711 | |||| | ||| |||||| Sbjct 105077 AGAAATACATCACAAGAACG 105058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525613359294720