Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022979.1 Length=52823 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 7e-12 >seq8 Length=24646021 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 11079 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCCTG 11138 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 11139 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 11197 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 11198 GCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCT-CCGAGCGGTGCGCGAGG 11256 |||||| ||| | | | ||| | || | ||||| | ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGAAG 19508431 Query 11257 TGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 11305 |||||| ||||| || | ||||||||| ||| ||| |||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168909239977920