Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq82 154 3e-32 >seq82 Length=657493 Score = 154 bits (170), Expect = 3e-32 Identities = 273/398 (69%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 ||||| ||||| | || || | || || | | || ||||||||||| || || Sbjct 459458 GAACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAAT 459399 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 || ||||| | ||||| |||||||| || || || ||| |||||||||| | ||| Sbjct 459398 ATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGAT 459339 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 | || | ||| | || || || || || || || ||||||||||| || || || Sbjct 459338 CTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTT 459279 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 ||| | ||||| ||||| | | ||||| ||||| || | || || ||| | || Sbjct 459278 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 459219 Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607 || || || || |||||| |||||| | ||||||||||||||||| ||| | || || Sbjct 459218 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 459159 Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667 ||||| |||||||| || || || || || || || | ||||| ||| | || || Sbjct 459158 GAAACTATTCACTCACGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCT 459099 Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAA 71705 | | |||||||| || | |||| |||| || || Sbjct 459098 TTAATATTTGATGATATTATTTCCAATAAACATATTAA 459061 Score = 89.7 bits (98), Expect = 9e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165188 TATTGGTCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCG 165247 |||| ||| ||||||||| |||||||| |||||||||||||||||| ||| |||||||| Sbjct 216625 TATTCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCG 216566 Query 165248 AATCCAG 165254 ||||||| Sbjct 216565 AATCCAG 216559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867325881738240