Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq82 163 3e-35 >seq82 Length=657493 Score = 163 bits (180), Expect = 3e-35 Identities = 305/448 (68%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 145932 ACATCAGGTCGTTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGC 145991 |||||| | || ||||| || | ||||| | |||||| | || ||||| || | || Sbjct 460819 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 460878 Query 145992 CTTTGTTGTTCTTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 146051 | | || || || | || | | |||||| ||| || ||||| |||||||| | | Sbjct 460879 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 460938 Query 146052 ATGTCGCCGCGCCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGT 146111 || ||||| ||||| | |||||| ||||| || || || || || || |||| | | Sbjct 460939 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 460998 Query 146112 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 146171 |||| | ||||||||| |||||||| |||| || | || |||| Sbjct 460999 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 461058 Query 146172 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 146231 |||||||||| | || || ||||| || || || || |||| ||| | || | ||||| Sbjct 461059 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 461118 Query 146232 TTGATTCAGCAGATTTGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 146291 | || || || |||||| || | || |||| || |||||| | ||| || | Sbjct 461119 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 461178 Query 146292 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTT 146351 | || ||||| ||||||||||| | | | || | |||||| || || || | |||||||| Sbjct 461179 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 461238 Query 146352 TCTTAGTTGACACAGCATCGTAAAAACG 146379 | |||||| | |||| |||||||| Sbjct 461239 TGAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554345665090560