Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq82 134 2e-26 >seq82 Length=657493 Score = 134 bits (148), Expect = 2e-26 Identities = 286/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 || || ||||| |||| ||| |||| |||| ||||||||||| |||||| | || ||| Sbjct 461263 TTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTT 461204 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 | || || || || || ||||| || |||||| ||||||| | || | | || Sbjct 461203 AGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGAT 461144 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || || || | ||| || ||||||| || || | | || ||||| || ||| Sbjct 461143 TCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGT 461084 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT--TCGTTCAGGTGAG--ATTCG 78863 |||| | || |||||||| | ||| |||| | | | || || ||| Sbjct 461083 ATTAATGCTGGAAAAATTCGTGCAGTAGGT--AGTCCTATTAGAAATGGCGAAGCATT-- 461028 Query 78864 TCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCA 78923 ||| |||||| ||||| || | ||||| ||||||| ||| || ||||| |||||||| Sbjct 461027 TCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCA 460968 Query 78924 AGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGA 78983 ||| || || | || || || || ||| || ||| || || ||||| || ||| |||| Sbjct 460967 AGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGA 460908 Query 78984 AAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGA 79043 || | |||||| | || || || | || |||||||||| | | ||||| |||| Sbjct 460907 AAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGA 460848 Query 79044 CTA 79046 || Sbjct 460847 TTA 460845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790143209303040