Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq82 127 1e-24 >seq82 Length=657493 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 37924 ATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCA 37983 ||| ||||||||||||| ||| || ||||| | ||| || |||| |||| ||||| Sbjct 104988 ATTACCACCTTGTCATATATTATTTCAGTTTTATGTTTTTAACAAAAAATTAAGTTGTCA 105047 Query 37984 GTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGC 38043 | || |||||| | |||| | || | || | || |||||||| || || ||||| Sbjct 105048 ACTTTACCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAATATAGCTAGTTATGC 105107 Query 38044 GTTGCTTACACATATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTGGAC 38103 | |||| ||||| |||| | |||||| ||||||||||| |||||| | ||||| Sbjct 105108 AATACTTATTCATATGATAGCACAACAATGTGATTTAGAAGTTGGAGAATTTTTATGGAC 105167 Query 38104 TGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGCTAAAAAACAATTA 38158 || |||| || || || || | ||||||| |||| ||| ||||||||| || Sbjct 105168 AGGAGGTGATGTCCATCTATATAATAATCACATTGAATTAGCAAAAAAACAAGTA 105222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248805427463008