Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023687.1 Length=53003 Score E Sequences producing significant alignments: (Bits) Value seq18 107 6e-19 seq9 107 6e-19 seq8 86.0 2e-12 >seq18 Length=36757632 Score = 107 bits (118), Expect = 6e-19 Identities = 383/598 (64%), Gaps = 22/598 (4%) Strand=Plus/Plus Query 43069 TCCCGCGTCCAGTCCGTCAAGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43119 || |||||||| | ||||| |||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 43120 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43173 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 43174 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 43233 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 43234 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 43293 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 43294 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 43353 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 43354 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATG 43413 || ||| | || | | || ||| | | | ||| || ||||||| || |||| | Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 43414 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 43473 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 43474 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCTTTGAAGA 43531 | ||| |||||||||||||| || || | ||| |||||| | ||| | Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 22718608 Query 43532 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTTCT 43591 | || | | ||| || |||||||||| |||| | | | | | | | || Sbjct 22718609 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 22718668 Query 43592 CAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACAC 43649 |||| || ||||| | | | || |||||| ||||||| |||||||| || |||||| Sbjct 22718669 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 107 bits (118), Expect = 6e-19 Identities = 383/598 (64%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 43069 TCCCGCGTCCAGTCCGTCAAGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43119 || |||||||| | ||||| |||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 43120 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43173 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 43174 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 43233 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 43234 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 43293 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 43294 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 43353 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 43354 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATG 43413 || ||| | || | | || ||| | | | ||| || ||||||| || |||| | Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 43414 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 43473 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 43474 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCTTTGAAGA 43531 | ||| |||||||||||||| || || | ||| |||||| | ||| | Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 16531736 Query 43532 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTTCT 43591 | || | | ||| || |||||||||| |||| | | | | | | | || Sbjct 16531735 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 16531676 Query 43592 CAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACAC 43649 |||| || ||||| | | | || |||||| ||||||| |||||||| || |||||| Sbjct 16531675 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 86.0 bits (94), Expect = 2e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 10413 GGAGAACGCAGGCCGCCAGCAGATCATTCACGCCGTCGAGAACGACCCGGAACCCCGCGT 10472 ||||| ||||| |||| |||||||| ||| ||| |||||||||| | || | | Sbjct 19508429 GGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGAT 19508370 Query 10473 CTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGCT 10532 | || ||||||||| | ||||| ||||| | || || ||||| ||||| |||||||| Sbjct 19508369 CGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGCT 19508310 Query 10533 GATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCTGGCCTCGACCTTGACACGGA 10592 ||| ||| || || |||| | ||| || | || || || |||| ||||| || Sbjct 19508309 GATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169485230566080