Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq82 154 2e-32 >seq82 Length=657493 Score = 154 bits (170), Expect = 2e-32 Identities = 277/405 (68%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 32808 CATTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTT 32867 || |||||| ||||| | | || || | ||| | | || ||||||||| | ||| | Sbjct 460823 CAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCT 460882 Query 32868 GTTGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGT 32927 || || || | || | | |||||| ||||| |||||| || |||||| | | ||| Sbjct 460883 ATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGT 460942 Query 32928 AGCAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTT 32987 || || ||||| | || || || || || ||| |||||| ||| | ||||| | ||| Sbjct 460943 TGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTT 461002 Query 32988 CCAGAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGC 33047 | || || ||| |||||||||| | |||||| | ||| | ||| | || Sbjct 461003 ATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGC 461062 Query 33048 ACGAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGA 33107 |||||| ||| |||| ||||| || || |||| | | ||| | || ||||| Sbjct 461063 ACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGA 461122 Query 33108 ACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCT 33167 ||||| || |||||||| ||| || | |||| ||| |||||| || |||||||| Sbjct 461123 ACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCT 461182 Query 33168 AAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 ||| || || || ||||| | ||| |||| || ||| || ||||| Sbjct 461183 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGG 461227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710278982991360