Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023695.1 Length=52481 Score E Sequences producing significant alignments: (Bits) Value seq18 105 2e-18 seq9 105 2e-18 >seq18 Length=36757632 Score = 105 bits (116), Expect = 2e-18 Identities = 385/600 (64%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 44808 TCCCGCGTCCAGTCCGTCAAGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44858 || |||||||| | ||||| |||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44859 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44912 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44913 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 44972 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44973 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 45032 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45033 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45092 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45093 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATA 45152 || ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45153 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45212 | || || |||||||| | ||| |||||| || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45213 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45268 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 45269 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45328 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 45329 CTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45388 |||||| || ||||| | | | || |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 105 bits (116), Expect = 2e-18 Identities = 385/600 (64%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 44808 TCCCGCGTCCAGTCCGTCAAGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44858 || |||||||| | ||||| |||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44859 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44912 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44913 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 44972 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44973 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCGCGGATCTCTATCCCA 45032 || | | ||| || ||||||||||| ||||| | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45033 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45092 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45093 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGATA 45152 || ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45153 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45212 | || || |||||||| | ||| |||||| || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45213 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45268 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 45269 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45328 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 45329 CTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45388 |||||| || ||||| | | | || |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167814857860416