Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023702.1 Length=52379 Score E Sequences producing significant alignments: (Bits) Value seq8 700 0.0 >seq8 Length=24646021 Score = 700 bits (776), Expect = 0.0 Identities = 700/903 (78%), Gaps = 35/903 (4%) Strand=Plus/Minus Query 11690 GATCATTCCCAGATCGCACAGACCAAAGACACGATGTTCACCGGGTACCTCGACCCCGTG 11749 ||||| | |||||||| |||||| || || ||||||| || ||||| || |||| | Sbjct 19507293 GATCACGCTCAGATCGCCCAGACCGGCGATACCATGTTCAAGGGCTACCTGGAGCCCGAG 19507234 Query 11750 CAGGCGAAGGACTACTTCGCCGAGGCCGAGAAGACCTCGATCGTTCAGCGTGTCGCCCAG 11809 ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 19507233 CAGGCGAAGGATTACTTCGCCGAGGCCGAGAAGACCTCGATCGTCCAGCAGTTCGCCCAG 19507174 Query 11810 AAGATCCCGATGGGTGCCACCGGCATCGTCATCCCCCACTGGACCGGAGACGTCTCCGCT 11869 ||| | ||||||||| |||| ||| ||||| |||||| ||| ||||| || Sbjct 19507173 AAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACTGGGTCGGCGACGTGAGTGCC 19507114 Query 11870 CAGTGGATCGGTGAAGGCGACATGAAGCCCATCACCAAGGGCAACATGACCAAGCGCGAC 11929 |||||||||||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct 19507113 CAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGGGCAACATGACTTCGC-AGAC 19507055 Query 11930 GTGCAC-CCCGCCAAGATCGCGACGATCTTCGTCGCCTCCGCGGAAACCGTCCGTGCGAA 11988 | | ||| ||||||||||||||||||||| || || ||||| ||||||||||| || Sbjct 19507054 CATCGCGCCCCACAAGATCGCGACGATCTTCGTGGCGTCTGCGGAGACCGTCCGTGCCAA 19506995 Query 11989 CCCGGCCAACTACCTGGGCACCATGCGGACCAAGGTCGCTACCGCGATCGCTATGGCGTT 12048 ||| |||||||||||||| |||||||| |||||||| || ||||| |||| |||||||| Sbjct 19506994 CCCCGCCAACTACCTGGGAACCATGCGTACCAAGGTGGCGACCGCCTTCGCGATGGCGTT 19506935 Query 12049 CGACAACGCCGCGCTGCACGGCACCAACGCCCCGTCCGCCTTCCAGGGTTACCTCGACCA 12108 |||| ||| ||| ||||||||||| || |||| |||| | ||| ||| || Sbjct 19506934 CGACGGCGCGGCGATGCACGGCACCGACAGCCCG------TTCCCGACCTACATCGGTCA 19506881 Query 12109 GTCGAACAAGACGCAGTCGAT------CA--------GCC-CGAACG---CCTACCAGGG 12150 | | | |||| | ||||| || ||| ||| || | |||||| Sbjct 19506880 GACCACCAAGGCCATCTCGATTGCTGACACCACCGGTGCCACGACCGTGTACGACCAGG- 19506822 Query 12151 CCTCGGCGTCAGCGGCTTGACCAAGCTGGTCACCGACGGCAAGAAGTGGACCCACACCCT 12210 | | ||| | |||| ||| | |||||| | ||||||||||||||||||||||||||| Sbjct 19506821 --TGGCCGTGAACGGCCTGAGCCTGCTGGTGAACGACGGCAAGAAGTGGACCCACACCCT 19506764 Query 12211 GCTCGACGACACCGTTGAGCCGGTTCTGAACGGATCGGTGGACGCCAACGGTCGCCCGCT 12270 || ||||||| | |||||| | |||||||| || |||| |||||||||||||| Sbjct 19506763 TCTGGACGACATCACCGAGCCGATCCTGAACGGCGCGAAGGACCAGAACGGTCGCCCGCT 19506704 Query 12271 GTTCGTGGAGTCGACCTAC---GAGTCCCTCACCACCCCGTTCCGCGAGGGCCGTATCCT 12327 |||| | |||||||||||| ||| | | | | ||||||||| |||||| ||| | Sbjct 19506703 GTTCATCGAGTCGACCTACGGTGAGGC---CGCGAGCCCGTTCCGTTCGGGCCGGATCGT 19506647 Query 12328 CGGCCGCCCGACCATCCTCAGCGATCACGTCGCCGAGGGCGATGTCGTGGGCTACGCCGG 12387 || ||| ||||||||||||||||| ||||||| |||||| || |||| | || Sbjct 19506646 CGCCCGTCCGACCATCCTCAGCGACCACGTCGTGGAGGGCACCACGGTCGGCTTCATGGG 19506587 Query 12388 TGACTTCTCCCAGATCATCTGGGGCCAGGTCGGCGGCCTGTCCTTCGACGTCACCGACCA 12447 ||||||||||||| |||||||||||||| ||||||| |||||||||||||| || || || Sbjct 19506586 TGACTTCTCCCAGCTCATCTGGGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCA 19506527 Query 12448 GGCGACGCTGAACCTGGGCTCGCAAGAGTCCCCGAACTTCGTCTCGCTGTGGCAGCACAA 12507 |||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 19506526 GGCGACCCTGAACCTGGGCACCGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAA 19506467 Query 12508 CCTCGTCGCCGTCCGTGTCGAGGCCGAGTACGGCCTGCTCATCAACGACGTGAACGCGTT 12567 ||||||||| |||||||||||||| ||||||| | | | |||||||| | ||||| Sbjct 19506466 CCTCGTCGCAGTCCGTGTCGAGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTT 19506407 Query 12568 CGT 12570 ||| Sbjct 19506406 CGT 19506404 Score = 113 bits (124), Expect = 2e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 13093 TTTCGGGCCGAGGTGATCGACATCGAGGCCGAGGCCGTGCTTCGGCTGGTTCGGAATCAC 13152 || |||||||| ||||||||||||||||||| || ||||| || ||||| || || | Sbjct 19505985 TTCCGGGCCGATCTGATCGACATCGAGGCCGACGCGGTGCTGCGTCTGGTGCGTAACCCG 19505926 Query 13153 GAGGGCTACCTCTCGGAGACCGACGGCAACTACACGTACATGCTCCAGGC 13202 |||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 19505925 GAGGGCTACCTCTCGGAGACCGACGGGGCGTACACCTACCAGCTCCAGGC 19505876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167488463193792