Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023704.1 Length=51421 Score E Sequences producing significant alignments: (Bits) Value seq8 122 3e-23 >seq8 Length=24646021 Score = 122 bits (134), Expect = 3e-23 Identities = 249/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 10557 TTCTACGACTCGCAGCG--GGCTCAGTTCCATCCCGACCTGCCTCGCAACGATCGGCCTC 10614 ||||||||||| ||||| | ||| ||| || || || || |||||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCA--CCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10615 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATG 10673 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10674 CAGCAGTCGGAGACGCGCGGCGACGCGCTGACCCACCTGACGCTACGCG-CGGTGCGCGA 10732 |||| | || | | | ||| | ||| | ||||| || ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433 Query 10733 GGTGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAGCCCCG 10792 ||||||| ||||| |||| ||||||||| ||| || |||||||||| | || | Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 10793 CGTCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGAT 10852 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 10853 GCTGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCCGGTCTCGACCTTGACAC 10912 |||||| ||| || || |||| | ||| || | || ||||| |||| ||||| Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 10913 GGA 10915 || Sbjct 19508252 CGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164422913285696