Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023705.1 Length=41650 Score E Sequences producing significant alignments: (Bits) Value seq9 2715 0.0 >seq9 Length=46179939 Score = 2715 bits (3010), Expect = 0.0 Identities = 1527/1545 (99%), Gaps = 0/1545 (0%) Strand=Plus/Minus Query 29617 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCTGAAGCCGCGCGTCTCTACGGCG 29676 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 27699569 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 27699510 Query 29677 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 29736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699509 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 27699450 Query 29737 ATNNNNNNNNNNAATGAAGGGCACCCTCGGCGCCCTGTGCGGTCTGGCCGGCGACGCTCT 29796 || |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 27699449 ATTCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 27699390 Query 29797 GATCGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 29856 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699389 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 27699330 Query 29857 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 29916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699329 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 27699270 Query 29917 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAACCTGCTCAACATCGCCGCGAC 29976 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 27699269 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 27699210 Query 29977 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 30036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699209 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 27699150 Query 30037 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 30096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699149 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 27699090 Query 30097 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 30156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699089 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 27699030 Query 30157 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 30216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699029 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 27698970 Query 30217 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 30276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698969 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 27698910 Query 30277 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 30336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698909 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 27698850 Query 30337 ACACCGCCGGCCGAGGCTCGTCGAGGCGCTAGTGCCCGGACTGTGATTCGCGCGTTGCTC 30396 ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 27698849 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 27698790 Query 30397 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 30456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698789 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 27698730 Query 30457 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 30516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698729 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 27698670 Query 30517 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 30576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698669 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 27698610 Query 30577 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 30636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698609 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 27698550 Query 30637 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 30696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698549 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 27698490 Query 30697 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 30756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698489 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 27698430 Query 30757 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 30816 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698429 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 27698370 Query 30817 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 30876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698369 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 27698310 Query 30877 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 30936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698309 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 27698250 Query 30937 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 30996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698249 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 27698190 Query 30997 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 31056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698189 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 27698130 Query 31057 GGATCGACCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 31116 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698129 GGATCGGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 27698070 Query 31117 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 31161 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698069 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 27698025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133156224191744