Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_023708.1
Length=51083
Score E
Sequences producing significant alignments: (Bits) Value
seq18 167 8e-37
seq9 167 8e-37
seq8 82.4 2e-11
>seq18
Length=36757632
Score = 167 bits (184), Expect = 8e-37
Identities = 405/602 (67%), Gaps = 30/602 (5%)
Strand=Plus/Plus
Query 42883 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 42933
|| |||||||| | |||||||||||| || | |||||||| || |||||
Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193
Query 42934 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 42987
||| ||||||| ||||| | | || | ||||| ||||| | | |||
Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253
Query 42988 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 43046
||||||||||| ||||||||||||| || || || || | |||| | ||| ||||
Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312
Query 43047 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 43106
|||| | | ||| ||||||| ||| | || ||||||||||| || || | | |||||
Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372
Query 43107 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTGCCGTCCGGTGTGTGCCACAC 43166
|||||||||| ||||| ||||| ||| | ||||| |||||||| || ||| |
Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432
Query 43167 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43226
||| ||| || | | || ||| | | | ||| || ||||||| ||| ||||
Sbjct 22718433 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489
Query 43227 ACCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAAGCGAACCACCAGC 43285
| || ||||||||||| || | ||| |||||| || || ||||||
Sbjct 22718490 GGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACT 22718548
Query 43286 CGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTG 43341
||| ||| |||||||||||||| || || | ||| |||||| | ||| |
Sbjct 22718549 CGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGG 22718604
Query 43342 AAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTAT 43401
|| || || | | ||| || |||||||||| |||| | || | ||| | |
Sbjct 22718605 AACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACC 22718664
Query 43402 TTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGTAGCCAGGCCGCTGGGCGTTTCCAC 43461
|||||| || ||||||| | | || |||||| | |||||||||||||| || | ||||
Sbjct 22718665 GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCAC 22718724
Query 43462 AC 43463
||
Sbjct 22718725 AC 22718726
>seq9
Length=46179939
Score = 167 bits (184), Expect = 8e-37
Identities = 405/602 (67%), Gaps = 30/602 (5%)
Strand=Plus/Minus
Query 42883 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 42933
|| |||||||| | |||||||||||| || | |||||||| || |||||
Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151
Query 42934 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 42987
||| ||||||| ||||| | | || | ||||| ||||| | | |||
Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091
Query 42988 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 43046
||||||||||| ||||||||||||| || || || || | ||||| ||| ||||
Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032
Query 43047 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 43106
|||| | | ||| ||||||| ||| | || ||||||||||| || || | | |||||
Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972
Query 43107 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTGCCGTCCGGTGTGTGCCACAC 43166
|||||||||| ||||| ||||| ||| | ||||| |||||||| || ||| |
Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912
Query 43167 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43226
||| ||| || | | || ||| | | | ||| || ||||||| ||| ||||
Sbjct 16531911 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855
Query 43227 ACCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAAGCGAACCACCAGC 43285
| || ||||||||||| || | ||| |||||| || || ||||||
Sbjct 16531854 GGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACT 16531796
Query 43286 CGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTG 43341
||| ||| |||||||||||||| || || | ||| |||||| | ||| |
Sbjct 16531795 CGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGG 16531740
Query 43342 AAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTAT 43401
|| || || | | ||| || |||||||||| |||| | || | ||| | |
Sbjct 16531739 AACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACC 16531680
Query 43402 TTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGTAGCCAGGCCGCTGGGCGTTTCCAC 43461
|||||| || ||||||| | | || |||||| | |||||||||||||| || | ||||
Sbjct 16531679 GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCAC 16531620
Query 43462 AC 43463
||
Sbjct 16531619 AC 16531618
>seq8
Length=24646021
Score = 82.4 bits (90), Expect = 2e-11
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 10209 TTCTACGACTCGCAGCG--GGCTCAGCATCACCCGGATCTACCTCGTAACGATCGGCCCC 10266
||||||||||| ||||| | ||| || |||||||| || || || ||||| || |
Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551
Query 10267 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10325
|||| | | | || ||| ||||||| ||||||||| || || || || || ||
Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492
Query 10326 CAGCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTGCGCG-CCGTCCGCGA 10384
|||||| ||| | | | ||| | || | ||||| || ||| | || |||||
Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433
Query 10385 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 10435
||||||| ||||| || | ||||||||| ||| ||| ||||||||||
Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163341330959040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |